View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_low_8 (Length: 462)
Name: NF18655_low_8
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 14022076 - 14022452
Alignment:
| Q |
18 |
atgagtcaccatgataggttcagttccaccgggcatcttaacaactcttgatgagttaggtaaagagtcgtaatttcctccacccatacataactcttca |
117 |
Q |
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| T |
14022076 |
atgagtcaccatgataggttcagttccaccaggcatcttaacaactcttgatgagttaggtaaagagtcgtaatttcctccacccatacataactcttca |
14022175 |
T |
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| Q |
118 |
tcttgttcctcttcttgatcttcatcaaaatccatttttgtagcaaaatttgaagttaggttatcaatggttgctttgatgtagtgaataataatttgag |
217 |
Q |
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| T |
14022176 |
tcttgttcctcttcttgatcttcatcaaaatccatttttgtagcaaaatttgaagttaggttatcaatggttgctttgatgtagtgaataataatttgag |
14022275 |
T |
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| Q |
218 |
ctgaaagaagaaagaaaacaaaggaacattcactctcactttcactctttttctctatgtgc-nnnnnnnngttcaaaggaaaattttaatcttcatttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
14022276 |
ctgaaagaagaaagaaaacaaaggaacattcactctcactttcactctttttctctatgtgctttttttttgttcaaaggaaaatttcaatcttcatttg |
14022375 |
T |
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| Q |
317 |
atattcatatacttttgaggttctgtgttatgtgtggtcttaatctaaataaacaaacagcatatacaaatacaaat |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14022376 |
atattcatatacttttgaggttctgtgttatgtgtggtcttaatctaaataaacaaacagcatatacaaatacaaat |
14022452 |
T |
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