View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18657_high_14 (Length: 359)
Name: NF18657_high_14
Description: NF18657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18657_high_14 |
 |  |
|
| [»] scaffold0017 (2 HSPs) |
 |  |  |
|
| [»] scaffold0061 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 35900977 - 35900640
Alignment:
| Q |
1 |
ccatcatattcatccaacttagagcaactagcaaggtatacatttactgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35900977 |
ccatcatattcatccaacttagagcaactagcaaggtatacatttactgcttcctccacaagaagattttcaatatcaatgtgttcaagaatttggagca |
35900878 |
T |
 |
| Q |
101 |
agtttctctccaagatggtagtaaaaatattgagcctaccaagccaacgaagccaacgaagaatcctatnnnnnnnnnactcatgtataatgcttccaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
35900877 |
agtttctctccaagatggtagtaaaaatattgagcctgccaagccaacgaagccaatgaagaatcctatcccccc---actcatgtataatgcttccaaa |
35900781 |
T |
 |
| Q |
201 |
aatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcggtggctcttcgcctggacactttatatcaagtggttctccacagagattag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35900780 |
aatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcggtggctcttcgcctggacactttatatcaagtggttctccgcagagattag |
35900681 |
T |
 |
| Q |
301 |
aattttcttcaaaacatgaagcattaaatgtctgcagttgc |
341 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35900680 |
aattttcttcaaaacatgaagcgttaaatgtctgcagttgc |
35900640 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 44 - 337
Target Start/End: Complemental strand, 44614499 - 44614206
Alignment:
| Q |
44 |
ttactgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctaccaag |
143 |
Q |
| |
|
||||||||||||||||| || || |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| || |||||||| |||||| |
|
|
| T |
44614499 |
ttactgcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtaagtttctctccaagatggtagtaacaacattgagccgaccaag |
44614400 |
T |
 |
| Q |
144 |
ccaacgaagccaacgaagaatcctatnnnnnnnnnactcatgtataatgcttccaaaaatattaaatt---gtcatctcctgcatcagttgtttgcactt |
240 |
Q |
| |
|
|||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||| |
|
|
| T |
44614399 |
ccaacgaaaccagtgaagaatcctatccccatg---ctcatgtataatgcttccaaaaatattgaattatcatcatctcctgcatcagttgttggcactt |
44614303 |
T |
 |
| Q |
241 |
gatatttcggtggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcag |
337 |
Q |
| |
|
||| ||| | ||| ||||| ||||||| ||| ||||||| ||||||||||||||||| |||||| ||||||||| |||||||||||| ||||||| |
|
|
| T |
44614302 |
gatgttttgatggatcttcttctggacattttctatcaaggggttctccacagagatttgaatttccttcaaaacttgaagcattaaagctctgcag |
44614206 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 44 - 285
Target Start/End: Original strand, 44783965 - 44784203
Alignment:
| Q |
44 |
ttactgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctaccaag |
143 |
Q |
| |
|
||||||||||||||| | || |||| ||||||| || || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
44783965 |
ttactgcttccaccagatgatgattctcaatattaaagtattcaagaatttggagtaggtttctctccaagatggtagtaacaatattgagcctataaaa |
44784064 |
T |
 |
| Q |
144 |
ccaacgaagccaacgaagaatcctatnnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgat |
243 |
Q |
| |
|
|||||||| | | ||||||||||| ||||||||||| ||||||||||||| | ||||||||||||| |||||| ||||| ||||||||| |
|
|
| T |
44784065 |
ccaacgaaactagtaaagaatcctatccccatg---ctcatgtataacgcttccaaaaatactgaattgtcatctccagcatcaattgttggcacttgat |
44784161 |
T |
 |
| Q |
244 |
atttcggtggctcttcgcctggacactttatatcaagtggtt |
285 |
Q |
| |
|
||| ||||||||||| |||||||| ||||||| |||||||| |
|
|
| T |
44784162 |
gttttggtggctcttcacctggacattttatatgaagtggtt |
44784203 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 180 - 321
Target Start/End: Complemental strand, 44146671 - 44146530
Alignment:
| Q |
180 |
ctcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcggtggctcttcgcctggacactttatatcaa |
279 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||||||||||||||||||||| || ||||||||| ||| | ||||||||| |||||||| || |||||| |
|
|
| T |
44146671 |
ctcatgtagaatgcttctaaaaatattgaattgtcatctcctgcatcagtagtcggcacttgatgttttgatggctcttctcctggacatttattatcaa |
44146572 |
T |
 |
| Q |
280 |
gtggttctccacagagattagaattttcttcaaaacatgaag |
321 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
44146571 |
gtggttctccacagagattagaatttccttcaaaatatgaag |
44146530 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 186 - 334
Target Start/End: Original strand, 11542858 - 11543006
Alignment:
| Q |
186 |
tataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcggtggctcttcgcctggacactttatatcaagtggtt |
285 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||| |||| ||||| || ||||| |||||||||||||||| |
|
|
| T |
11542858 |
tataatgcttccaaaaatattgaattgtcatcttctgcatcagttgtcggcacttgatgttttggtgaatcttctccaggacattttatatcaagtggtt |
11542957 |
T |
 |
| Q |
286 |
ctccacagagattagaattttcttcaaaacatgaagcattaaatgtctg |
334 |
Q |
| |
|
||||||| |||||| ||||| ||||||||| |||||| |||||||||| |
|
|
| T |
11542958 |
ctccacaaagattataatttccttcaaaacttgaagcgctaaatgtctg |
11543006 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 46 - 334
Target Start/End: Original strand, 17809940 - 17810225
Alignment:
| Q |
46 |
actgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctaccaagcc |
145 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| |||||||||||| |||||||||| ||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
17809940 |
actgcttccaccacgtgaagactttcaatatcaaagtgttcaagaatctggagtaagtatctctccaagacggtagtaacaatattgagcctaccaagcc |
17810039 |
T |
 |
| Q |
146 |
aacgaagccaacgaagaatcctatnnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcact-tgata |
244 |
Q |
| |
|
|||||| ||| ||||| || | ||||||||||||| ||| ||||| ||| | || ||||||||||||| |||||| ||||| | | |
|
|
| T |
17810040 |
aacgaaaccagtaaagaacccaa---gccccatgctcatgtataatgtttctaaaaacattgagttctcatctcctgcatttgttgttggcactctcgga |
17810136 |
T |
 |
| Q |
245 |
tttcggtggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctg |
334 |
Q |
| |
|
||| | || ||||| || ||||| || ||||||||||||||||||| |||||| |||||||||| |||| ||||||||||||||||| |
|
|
| T |
17810137 |
ttt-gcgggatcttctccaggacatattttatcaagtggttctccacaaagattaaaattttcttcgaaactggaagcattaaatgtctg |
17810225 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 251 - 337
Target Start/End: Original strand, 44794102 - 44794188
Alignment:
| Q |
251 |
tggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcag |
337 |
Q |
| |
|
||||||||| |||| || ||| ||||||| |||||||||||||||||||||||| ||||||||| |||||| || ||||||||||| |
|
|
| T |
44794102 |
tggctcttcttctgggcattttctatcaaggggttctccacagagattagaatttccttcaaaacttgaagcgttgaatgtctgcag |
44794188 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 11542783 - 11542859
Alignment:
| Q |
62 |
gaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagccta |
138 |
Q |
| |
|
||||||| ||||||| || | ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
11542783 |
gaagattctcaatattaaagcattcaagaatttggagtaggtttctctccaagatggcagtaacgatattgagccta |
11542859 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 37 - 337
Target Start/End: Complemental strand, 182462 - 182165
Alignment:
| Q |
37 |
tatacatttactgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcc |
136 |
Q |
| |
|
|||||||| || |||||||||||| || || |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
182462 |
tatacattcacggcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtaagtttctctccaagatggtagtaacaatattgagcc |
182363 |
T |
 |
| Q |
137 |
taccaagccaacgaagccaacgaagaatcctatnnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgc |
236 |
Q |
| |
|
||||||||||| ||| ||| |||||||||||| ||||| ||||||||||||||||||| | |||| |||||||||||||| |||||| || |
|
|
| T |
182362 |
taccaagccaatgaaaccagtgaagaatcctatccccatg---ctcatatataatgcttccaaaaatactgaattttcatctcctgcatccgttgttggc |
182266 |
T |
 |
| Q |
237 |
acttgatatttcggtggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgca |
336 |
Q |
| |
|
||||||| ||| |||| |||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
182265 |
acttgatgttttggtgtctcttcgcatggacactttatatcaagtggttatccacatagattagaattttcttcaaaacttgaagcgttaaatgtctgca |
182166 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 50 - 337
Target Start/End: Complemental strand, 171362 - 171078
Alignment:
| Q |
50 |
cttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctaccaagccaacg |
149 |
Q |
| |
|
||||||||||| ||| ||| |||||| || || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
171362 |
cttccaccacatgaaaattctcaatagtaaagtattcaagaatttggagtaggtttctctccaagatggtagtaacaatattgagcctaccaaaccaacg |
171263 |
T |
 |
| Q |
150 |
aagccaacgaagaatcctatnnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcg |
249 |
Q |
| |
|
|| ||| |||||||||||| ||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||| ||||||| ||| | |
|
|
| T |
171262 |
aaaccagtgaagaatcctatccccatg---ctcatatataatgcttcaaaaaatattgaattttcatctcctgcatcagttgttggcacttgtggttttg |
171166 |
T |
 |
| Q |
250 |
gtggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcag |
337 |
Q |
| |
|
||| ||||| ||||| || ||| ||||||| ||||||||||||||||| ||||| ||||||||| |||||| |||||||||||||| |
|
|
| T |
171165 |
ctggttcttctcctgggcattttctatcaaggggttctccacagagatttgaattcccttcaaaacttgaagcgttaaatgtctgcag |
171078 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 50 - 337
Target Start/End: Original strand, 27430 - 27714
Alignment:
| Q |
50 |
cttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctaccaagccaacg |
149 |
Q |
| |
|
||||||||||| ||| ||| |||||| || || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
27430 |
cttccaccacatgaaaattctcaatagtaaagtattcaagaatttggagtaggtttctctccaagatggtagtaacaatattgagcctaccaaaccaacg |
27529 |
T |
 |
| Q |
150 |
aagccaacgaagaatcctatnnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcg |
249 |
Q |
| |
|
|| ||| |||||||||||| ||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||| ||||||| ||| | |
|
|
| T |
27530 |
aaaccagtgaagaatcctatccccatg---ctcatatataatgcttcaaaaaatattgaattttcatctcctgcatcagttgttggcacttgtggttttg |
27626 |
T |
 |
| Q |
250 |
gtggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcag |
337 |
Q |
| |
|
||| ||||| ||||| || ||| ||||||| ||||||||||||||||| ||||| ||||||||| |||||| |||||||||||||| |
|
|
| T |
27627 |
ctggttcttctcctgggcattttctatcaaggggttctccacagagatttgaattcccttcaaaacttgaagcgttaaatgtctgcag |
27714 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 41 - 328
Target Start/End: Complemental strand, 26730116 - 26729832
Alignment:
| Q |
41 |
catttactgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctacc |
140 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||| ||||| |||||||||||| |||||||||||||||||||||| | || ||| | ||||||||||||| |
|
|
| T |
26730116 |
cattcactgcttccaccacatgaaggctttcaagatcaaggtgttcaagaatctggagtaagtttctctccaagacgatattaacattattgagcctacc |
26730017 |
T |
 |
| Q |
141 |
aagccaacgaagccaacgaagaatcctatnnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcactt |
240 |
Q |
| |
|
||||||||||| | | |||||||||||| ||||||||||| ||||||||||||||| |||| || | ||||| || |||||| |||||| |
|
|
| T |
26730016 |
aagccaacgaaactagtgaagaatcctatccccatg---ctcatgtataaagcttccaaaaatattgaattctcgtttcctgaatttgttgttggcactt |
26729920 |
T |
 |
| Q |
241 |
gatatttcggtggctcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaa |
328 |
Q |
| |
|
||| || | ||||||||| |||||||| |||||| ||||||||||||||||||||| |||||| || ||||||||| |||||||| |
|
|
| T |
26729919 |
gatgttcggttggctcttctcctggacattttataccaagtggttctccacagagatcggaatttcctccaaaacatgcggcattaaa |
26729832 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 46 - 337
Target Start/End: Original strand, 29505800 - 29506091
Alignment:
| Q |
46 |
actgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcctaccaagcc |
145 |
Q |
| |
|
||||||||||||||| ||| | |||||||||||| | |||||||||||||| || |||||||||||||||||||| || |||||||| |||| ||||| |
|
|
| T |
29505800 |
actgcttccaccacatgaacactttcaatatcaaagcattcaagaatttggaataggtttctctccaagatggtaggaacaatattgaccctataaagcc |
29505899 |
T |
 |
| Q |
146 |
aacgaagccaacgaagaatcctatnnnnnnnnnactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatat |
245 |
Q |
| |
|
||| || | ||||||||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||| || ||||||||| | |
|
|
| T |
29505900 |
aacaaaagtagtgaagaatcctagccccatg---ctcatgtataatgcttccaaaaatattgaactgtaatctcctgcatcagttattggcacttgatgt |
29505996 |
T |
 |
| Q |
246 |
ttcggtggc---tcttcgcctggacactttatatcaagtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgcag |
337 |
Q |
| |
|
|| || ||| ||||| |||||||| |||||||||||||| |||||||||||||||| |||| ||||||||| |||||| |||| |||||||| |
|
|
| T |
29505997 |
tttggcggctcttcttctcctggacattttatatcaagtggctctccacagagattaggatttccttcaaaacttgaagcgctaaaagtctgcag |
29506091 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 180 - 336
Target Start/End: Original strand, 29227281 - 29227437
Alignment:
| Q |
180 |
ctcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcggtggctcttcgcctggacactttatatcaa |
279 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||||||||||||| ||||||||||| ||||||| ||| | | ||||||| |||||||| ||| |||||| |
|
|
| T |
29227281 |
ctcatgtagaatgcttccagaaatattgaattgtcatctcctacatcagttgttggcacttgtggttttgattgctcttctcctggacattttctatcaa |
29227380 |
T |
 |
| Q |
280 |
gtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgca |
336 |
Q |
| |
|
| || |||||||| || || |||||| | ||||||| |||||||||||| ||||||| |
|
|
| T |
29227381 |
ggggatctccacaaaggttggaatttccatcaaaacttgaagcattaaaggtctgca |
29227437 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 180 - 336
Target Start/End: Original strand, 29340580 - 29340736
Alignment:
| Q |
180 |
ctcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgatatttcggtggctcttcgcctggacactttatatcaa |
279 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||||||||||||| ||||||||||| ||||||| ||| | | ||||||| |||||||| ||| |||||| |
|
|
| T |
29340580 |
ctcatgtagaatgcttccagaaatattgaattgtcatctcctacatcagttgttggcacttgtggttttgattgctcttctcctggacattttctatcaa |
29340679 |
T |
 |
| Q |
280 |
gtggttctccacagagattagaattttcttcaaaacatgaagcattaaatgtctgca |
336 |
Q |
| |
|
| || |||||||| || || |||||| | ||||||| |||||||||||| ||||||| |
|
|
| T |
29340680 |
ggggatctccacaaaggttggaatttccatcaaaacttgaagcattaaaggtctgca |
29340736 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 29218239 - 29218336
Alignment:
| Q |
39 |
tacatttactgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcc |
136 |
Q |
| |
|
|||||| |||||||||| |||| || |||| ||||||| | | ||||||||||||||||| |||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
29218239 |
tacattcactgcttccagcacatgatgattctcaatattatcgcattcaagaatttggagtaggtttctttccaagacggtagtaacaatattgagcc |
29218336 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 29331538 - 29331635
Alignment:
| Q |
39 |
tacatttactgcttccaccacaagaagattttcaatatcaatgtgttcaagaatttggagtaagtttctctccaagatggtagtaaaaatattgagcc |
136 |
Q |
| |
|
|||||| |||||||||| |||| || |||| ||||||| | | ||||||||||||||||| |||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
29331538 |
tacattcactgcttccagcacatgatgattctcaatattatcgcattcaagaatttggagtaggtttctttccaagacggtagtaacaatattgagcc |
29331635 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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