View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18657_high_18 (Length: 270)
Name: NF18657_high_18
Description: NF18657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18657_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 4241426 - 4241172
Alignment:
| Q |
10 |
catcatttggtgtgtattgtatttttgggttttgtgattcaaaatcccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagagagtga |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4241426 |
catcatttggtgtgtattgtatttttgggttttgtgattcaaaatcccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagaaagtga |
4241327 |
T |
|
| Q |
110 |
agatttaagatttggaacaattgtttgaaagaagaatgaagtgtctgattgtgaatttgggagggtgtagaataagatgtattctattggatggaaccta |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4241326 |
agatttaagatttggaacaattgtttgaaagaagaatgaagtgtctgattgtgaatttgggagggtgtagaataagatgtattctattggatggaacctt |
4241227 |
T |
|
| Q |
210 |
agccaaaatatgtcgaaaaaagtgagagagattgaggttgtttggtttgatgatg |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4241226 |
agccaaaatatgtcgaaaaaagtgagagagattgaggttgtttggtttgatgatg |
4241172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 56 - 252
Target Start/End: Complemental strand, 4250620 - 4250424
Alignment:
| Q |
56 |
ccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagagagtgaagatttaagatttggaacaattgtttgaaagaagaatgaagtgtct |
155 |
Q |
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||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| |||| || | |
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| T |
4250620 |
ccaaacgatgttaccagctaaagggagaaaatgttggagggttaaagagagtgatgatttgagatttggaacaatcgtttgaaagaagaaagaagggtgt |
4250521 |
T |
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| Q |
156 |
gattgtgaatttgggagggtgtagaataagatgtattctattggatggaacctaagccaaaatatgtcgaaaaaagtgagagagattgaggttgttt |
252 |
Q |
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| T |
4250520 |
gattgtgaatttgggagggtgtagaagaaaactcgttctactggatggaaccttagccaaaatatgtcgaagaaagtaagagggattgaggtggttt |
4250424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 56 - 264
Target Start/End: Complemental strand, 4195843 - 4195635
Alignment:
| Q |
56 |
ccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagagagtgaagatttaagatttggaacaattgtttgaaagaagaatgaagtgtct |
155 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||| ||||||| ||||||||| ||| ||||||||| | |||| || ||||| ||||||| | |
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| T |
4195843 |
ccaaacgattttaccagctaaaggaagaaagtgttggagggttaaagagaatgaagatttgagaattggaacaagtttttggaaaaagaaagaagtgtgt |
4195744 |
T |
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| Q |
156 |
gattgtgaatttgggagggtgtagaataagatgtattctattggatggaacctaagccaaaatatgtcgaaaaaagtgagagagattgaggttgtttggt |
255 |
Q |
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|| ||||||||||||||||||||||| || | ||||| |||||||||||||||||||||||||| || |||| |||| | ||| ||| ||||| |
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| T |
4195743 |
gaatgtgaatttgggagggtgtagaagaaaacacgttctaccggatggaacctaagccaaaatatgtcaaagtaagtaagaggggttgttgttttttggg |
4195644 |
T |
|
| Q |
256 |
ttgatgatg |
264 |
Q |
| |
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||||||||| |
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| T |
4195643 |
ttgatgatg |
4195635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 4189000 - 4188746
Alignment:
| Q |
10 |
catcatttggtgtgtattgtatttttgggttttgtgattcaaaatcccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagagagtga |
109 |
Q |
| |
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||||||||| |||||| || |||||||| | ||| ||||| | |||||| || ||||| |||||||| ||||||||||||||||| ||||||||||| |
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| T |
4189000 |
catcatttgttgtgtactggatttttggttgttgagattctgatggccaaacaattttaccagctaaagggagaaagtgttggagggttaaagagagtga |
4188901 |
T |
|
| Q |
110 |
agatttaagatttggaacaattgtttgaaagaagaatgaagtgtctgattgtgaatttgggagggtgtagaataagatgtattctattggatggaaccta |
209 |
Q |
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||| | ||| ||||||| | | ||||||||||||| |||| || |||||||||||||||||||||||| || ||||| |||||| ||||||||| | |
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| T |
4188900 |
tgatctgagaattggaactagtttttgaaagaagaaagaagggtgtgattgtgaatttgggagggtgtaaaagaagattcgttctataggatggaacttt |
4188801 |
T |
|
| Q |
210 |
agccaaaatatgtcgaaaaaagtgagagagattgaggttgtttggtttgatgatg |
264 |
Q |
| |
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| ||||||||||||||| ||||||| || |||| || |||||| ||||||||| |
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| T |
4188800 |
atccaaaatatgtcgaagaaagtgaaaggaattgttgtagtttgggttgatgatg |
4188746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 4233638 - 4233425
Alignment:
| Q |
10 |
catcatttggtgtgtattgtatttttgggttttgtgattcaaaatcccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagagagtga |
109 |
Q |
| |
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|||||||||| || ||||| ||| |||| | ||| ||||| ||| ||||||||||||||| |||||||| ||||||| | |||||| ||||||||||| |
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| T |
4233638 |
catcatttggagtatattggattattggttcttgagattctaaaggccaaacgatgttaccagctaaagggagaaagtccttgagggttaaagagagtga |
4233539 |
T |
|
| Q |
110 |
agatttaagatttggaacaattgtttgaaagaagaatgaagtgtctgattgtgaatttgggagggtgtagaataagatgtattctattggatggaaccta |
209 |
Q |
| |
|
|||||| ||| ||||||||| | | |||||||| |||| || ||| |||||||||||||||| |||||| || | ||||| |||||||||||| |
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| T |
4233538 |
agatttgagaattggaacaagcttcttgaagaagaaagaagggtgtgaatgtgaatttgggagggcgtagaagaaaacacgttctactggatggaacctt |
4233439 |
T |
|
| Q |
210 |
agccaaaatatgtc |
223 |
Q |
| |
|
|||||||||||||| |
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| T |
4233438 |
agccaaaatatgtc |
4233425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 4102543 - 4102418
Alignment:
| Q |
56 |
ccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagagagtgaagatttaagatttggaacaattgtttgaaagaagaatgaagtgtct |
155 |
Q |
| |
|
||||||||||||||| |||||||| || |||| ||||||||| |||||||||||| |||| || |||||||||| ||| ||| ||| | |||| || | |
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| T |
4102543 |
ccaaacgatgttaccagctaaagggaggaagttttggagggttaaagagagtgaatatttgagttttggaacaaggttttcaaaaaagtaagaagggtgt |
4102444 |
T |
|
| Q |
156 |
gattgtgaatttgggagggtgtagaa |
181 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
4102443 |
gattgtgaatttgggagggtgtagaa |
4102418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 216
Target Start/End: Complemental strand, 4122020 - 4121860
Alignment:
| Q |
56 |
ccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagagagtgaagatttaagatttggaacaattgtttgaaagaagaatgaagtgtct |
155 |
Q |
| |
|
||||||||||||||| |||||||| | || | ||||||||| ||||||||||||||||| || |||||||||| ||| || ||||| |||| || | |
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| T |
4122020 |
ccaaacgatgttaccagctaaaggtgggaatttttggagggttaaagagagtgaagatttgagttttggaacaaggttttcaacaaagaaagaagggtgt |
4121921 |
T |
|
| Q |
156 |
gattgtgaatttgggagggtgtagaataagatgtattctattggatggaacctaagccaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||| | |||||| ||||| ||||||| |
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| T |
4121920 |
gattgtgaatttgggagggtgtagaagaagatacgttcaactggatgaaaccttagccaaa |
4121860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 4192084 - 4191969
Alignment:
| Q |
66 |
ttaccggctaaaggaagaaagtgttggagggtcaaagagagtgaagatttaagatttggaacaattgtttgaaagaagaatgaagtgtctgattgtgaat |
165 |
Q |
| |
|
||||| |||||||| |||||||||| |||||| |||||| |||||||||| ||| ||| ||||| |||| |||||||| |||| || |||||||||| |
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| T |
4192084 |
ttaccagctaaagggagaaagtgtttgagggttaaagagggtgaagatttgagaattgtaacaagcttttggaagaagaaagaagggtgtgattgtgaac |
4191985 |
T |
|
| Q |
166 |
ttgggagggtgtagaa |
181 |
Q |
| |
|
|||||||||||||||| |
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| T |
4191984 |
ttgggagggtgtagaa |
4191969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 4094995 - 4094870
Alignment:
| Q |
56 |
ccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagagagtgaagatttaagatttggaacaattgtttgaaagaagaatgaagtgtct |
155 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||| || || ||||||||||||||||| || |||||||||| ||| ||||| || | || || | |
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| T |
4094995 |
ccaaacgatgttaccagctaaagggaggaagtgttgtagagttaaagagagtgaagatttgagttttggaacaagattttcgaagaaaaaagtagggtgt |
4094896 |
T |
|
| Q |
156 |
gattgtgaatttgggagggtgtagaa |
181 |
Q |
| |
|
|| |||||| |||||||||||||||| |
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|
| T |
4094895 |
gagtgtgaacttgggagggtgtagaa |
4094870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 4101077 - 4101028
Alignment:
| Q |
155 |
tgattgtgaatttgggagggtgtagaataagatgtattctattggatgga |
204 |
Q |
| |
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||||||||| |||||||||||||| || |||||| |||||| |||||||| |
|
|
| T |
4101077 |
tgattgtgattttgggagggtgtacaaaaagatgcattctactggatgga |
4101028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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