View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18657_high_19 (Length: 267)

Name: NF18657_high_19
Description: NF18657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18657_high_19
NF18657_high_19
[»] chr2 (3 HSPs)
chr2 (1-246)||(6257046-6257292)
chr2 (73-142)||(12328933-12329002)
chr2 (1-42)||(12328886-12328927)
[»] chr4 (4 HSPs)
chr4 (1-246)||(43429001-43429251)
chr4 (1-246)||(51206569-51206816)
chr4 (1-143)||(21438478-21438618)
chr4 (1-51)||(43429239-43429288)
[»] chr3 (2 HSPs)
chr3 (1-143)||(54523069-54523210)
chr3 (145-187)||(54517369-54517411)
[»] chr1 (4 HSPs)
chr1 (73-142)||(4437013-4437082)
chr1 (73-142)||(25668811-25668880)
chr1 (1-42)||(4437088-4437129)
chr1 (1-42)||(25668886-25668927)
[»] chr7 (1 HSPs)
chr7 (73-127)||(26785067-26785121)
[»] chr6 (2 HSPs)
chr6 (73-127)||(15671800-15671854)
chr6 (73-127)||(33487492-33487546)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 6257046 - 6257292
Alignment:
Q  1 aaaaagatcaaaacaagtgcaccataaacatgagcacaaaaaagatcaaaataagtacattttgaaagggacttcttaccaaaattatggagatgatctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6257046 aaaaagatcaaaacaagtgcaccataaacatgagcacaaaaaagatcaaaataagtacattttgaaagggactttttaccaaaattatggagatgatctt 6257145  T
Q  101 tggggacaattgcggctgtcatgatgcacacactcaccgcatgtcaaacccaccattgaacagcaataaaaccaacaagaaaatagaaag-nnnnnnnnn 199  Q
    |||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||              
T  6257146 tggggacagttgcggctgtcatgatgcacatactcaccgcatgccaaacccaccattgaacagcaataaaaccaacaagaaaatagaaagaaaaaaaaaa 6257245  T
Q  200 cagctaatacacatccatatataaacccaatatcatcccatgaaaag 246  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  6257246 cagctaatacacacccatatataaacccaatatcatcccatgaaaag 6257292  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 12328933 - 12329002
Alignment:
Q  73 ttcttaccaaaattatggagatgatctttggggacaattgcggctgtcatgatgcacacactcaccgcat 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12328933 ttcttaccaaaattatggagatgatctttggggacaattgcggctgtcatgatgcacatactcaccgcat 12329002  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12328886 - 12328927
Alignment:
Q  1 aaaaagatcaaaacaagtgcaccataaacatgagcacaaaaa 42  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  12328886 aaaaagatcaaaataagtacaccataaacatgagcacaaaaa 12328927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 43429251 - 43429001
Alignment:
Q  1 aaaaagatcaaaacaagtgcaccataaacatgagcacaaaaaagatcaaaataagtacattttgaaagggacttcttaccaaaattatggagatgatctt 100  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43429251 aaaaagatcaaaacaaatgcaccataaacatgaacacaaaaaagatcaaaataagtacattttgaaaggggcttcttaccaaaattatggagatgatctt 43429152  T
Q  101 tggggacaattgcggctgtcatgatgcacacactcaccgcatgtcaaacccaccattgaacagcaataaaaccaacaagaaaataga-----aagnnnnn 195  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||     ||          
T  43429151 tggggacaattgcggctgtcatgatgcacatactcaccgcatgccaaacccaccattgaacagcaataaaaccaacaagaaaatagaaaaggaaaaaaaa 43429052  T
Q  196 nnnncagctaatacacatccatatataaacccaatatcatcccatgaaaag 246  Q
        ||||||||||||| |||||||||||||||||||||||||||||||||    
T  43429051 aaaccagctaatacacacccatatataaacccaatatcatcccatgaaaag 43429001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 51206816 - 51206569
Alignment:
Q  1 aaaaagatcaaaacaagtgcaccataaacatgagcacaaaaaagatcaaaataagtacattttgaaagggacttcttaccaaaattatggagatgatctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  51206816 aaaaagatcaaaacaagtgcaccataaacatgagcacaaaaaatatcaaaataagtacattttgaaaggggcttcttaccaaaataatggagatgatctt 51206717  T
Q  101 tggggacaattgcggctgtcatgatgcacacactcaccgcatgtcaaacccaccattgaacagcaataaaaccaacaagaaaatagaaag---nnnnnnn 197  Q
    ||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||              
T  51206716 tggggacaattgcgg-tgtcatgatgcacatactcaccgcatgccaaacccaccattgaacagcagtaaaaccaacaagaaaatagaaagaaaaaaaaaa 51206618  T
Q  198 nncagctaatacacatccatatataaacccaatatcatcccatgaaaag 246  Q
       |||||||||||| ||||||||||||| |||||||||||||||||||    
T  51206617 actagctaatacacacccatatataaacctaatatcatcccatgaaaag 51206569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 21438478 - 21438618
Alignment:
Q  1 aaaaagatcaaaacaagtgcaccataaacatgagcacaaaaaagatcaaaataagtacattttgaaagggacttcttaccaaaattatggagatgatctt 100  Q
    |||||||||||| ||||||||||||||||||||||||| ||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||||    
T  21438478 aaaaagatcaaa-caagtgcaccataaacatgagcacagaaa-gatcaaaacaaatacattttgaaaggggcttcttaccaaaattatggagatgatctt 21438575  T
Q  101 tggggacaattgcggctgtcatgatgcacacactcaccgcatg 143  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  21438576 tggggacaattgcggctgtcatgatgcacatactcaccgcatg 21438618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 43429288 - 43429239
Alignment:
Q  1 aaaaagatcaaaacaagtgcaccataaacatgagcacaaaaaagatcaaaa 51  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  43429288 aaaaagatcaaaacaaatgcaccataaacatgagcaca-aaaagatcaaaa 43429239  T

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Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 54523210 - 54523069
Alignment:
Q  1 aaaaagatcaaaacaagtgcaccataaacatgagcacaaaaaagatcaaaataagtacattttgaaagggacttcttaccaaaattatggagatgatctt 100  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||||    
T  54523210 aaaaagatcaaaacaagtgcaccataaacatgaggacaaaaa-gatcaaaacaaatacattttgaaaggggcttcttaccaaaattatggagatgatctt 54523112  T
Q  101 tggggacaattgcggctgtcatgatgcacacactcaccgcatg 143  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  54523111 tggggacaattgcggctgtcatgatgcacatactcaccgcatg 54523069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 54517411 - 54517369
Alignment:
Q  145 caaacccaccattgaacagcaataaaaccaacaagaaaataga 187  Q
    |||||| |||||||||| |||||||||| ||||||||||||||    
T  54517411 caaacctaccattgaacggcaataaaactaacaagaaaataga 54517369  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 4437082 - 4437013
Alignment:
Q  73 ttcttaccaaaattatggagatgatctttggggacaattgcggctgtcatgatgcacacactcaccgcat 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4437082 ttcttaccaaaattatggagatgatctttggggacaattgcggctgtcatgatgcacatactcaccgcat 4437013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 25668880 - 25668811
Alignment:
Q  73 ttcttaccaaaattatggagatgatctttggggacaattgcggctgtcatgatgcacacactcaccgcat 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25668880 ttcttaccaaaattatggagatgatctttggggacaattgcggctgtcatgatgcacatactcaccgcat 25668811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4437129 - 4437088
Alignment:
Q  1 aaaaagatcaaaacaagtgcaccataaacatgagcacaaaaa 42  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  4437129 aaaaagatcaaaataagtacaccataaacatgagcacaaaaa 4437088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25668927 - 25668886
Alignment:
Q  1 aaaaagatcaaaacaagtgcaccataaacatgagcacaaaaa 42  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  25668927 aaaaagatcaaaataagtacaccataaacatgagcacaaaaa 25668886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 26785121 - 26785067
Alignment:
Q  73 ttcttaccaaaattatggagatgatctttggggacaattgcggctgtcatgatgc 127  Q
    |||||||||||| ||||||||| || | |  ||||||||||||||||||||||||    
T  26785121 ttcttaccaaaactatggagattatttgttaggacaattgcggctgtcatgatgc 26785067  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 15671800 - 15671854
Alignment:
Q  73 ttcttaccaaaattatggagatgatctttggggacaattgcggctgtcatgatgc 127  Q
    |||||||||||| ||||||||| || | |  ||||||||||||||||||||||||    
T  15671800 ttcttaccaaaactatggagattatttgttaggacaattgcggctgtcatgatgc 15671854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 33487546 - 33487492
Alignment:
Q  73 ttcttaccaaaattatggagatgatctttggggacaattgcggctgtcatgatgc 127  Q
    |||||||||||| ||||||||| || | |  ||||||||||||||||||||||||    
T  33487546 ttcttaccaaaactatggagattatttgttaggacaattgcggctgtcatgatgc 33487492  T

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