View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18657_high_23 (Length: 238)
Name: NF18657_high_23
Description: NF18657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18657_high_23 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 31045516 - 31045296
Alignment:
| Q |
18 |
gactacaaccaaggttctaagtcgtagacgtgtcatgatttttaatgttgcgaagaatttgtagtaaaatgcggttgatatagtgcatgtttggcataaa |
117 |
Q |
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| T |
31045516 |
gactacaaccaaggttctaagtcgtagacgtgtcacgatttttaatgttgcgaagaatttgtagtaaaatgcggttgatatagtgcatgtttggcataaa |
31045417 |
T |
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| Q |
118 |
agtggctttgtcgagatcacagtgactacggagtgtaacttttacaagatcacagttacttactgtgatttcggaaaagcgaccatgatatttaatatac |
217 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31045416 |
agtggctttgtcgagatcacagtgactacagagtgtaacttctacaagatcacagtgacttactgtgattttggaaaagcgaccatgatatttaatatac |
31045317 |
T |
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| Q |
218 |
acatagtcttaactgcaattt |
238 |
Q |
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||||||||||||||||||||| |
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| T |
31045316 |
acatagtcttaactgcaattt |
31045296 |
T |
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