View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18657_high_4 (Length: 530)
Name: NF18657_high_4
Description: NF18657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18657_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 23872956 - 23873325
Alignment:
| Q |
1 |
ttagtatatgttgaaattggtgtttgagaataaaatttgataattatatttgtgtccttgttggtatgcttgatttgtcctttttatgtcttgttttgtt |
100 |
Q |
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| T |
23872956 |
ttagtatatgtttaaattggtgtttgagaataaaatttgataattatatttgtgtccttgttggtatgcttgatttgtcctttttatgttttgttttgtt |
23873055 |
T |
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| Q |
101 |
taaccattgtgatattcaaattaagctatcaag---cttatgagtcattattcaaatttagaatatgattttaggtgcagcaatgaacaataaagttacc |
197 |
Q |
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| T |
23873056 |
taaccattgagatattcaaattaagctatcaagcaccttataagtcattattaaaatttagaatatgattttaggtgcagcaatgaacaataaagttacc |
23873155 |
T |
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| Q |
198 |
atttggagccagctaagaaacgtgtatgataataatattttgtggcattgtcatgaaatggtaagnnnnnnntgcacattctatggaattggatttcagt |
297 |
Q |
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| T |
23873156 |
atttggagcaagctaagaaacgtgtatgataataatattttgtggcattgtcatgaaatggtaagaaaaaaatgcacattctatggaattggatttcagt |
23873255 |
T |
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| Q |
298 |
gttatcaattgtcattttcaatattttcggtgaaagttcatttaacaagttaaaataacatttccctctc |
367 |
Q |
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| T |
23873256 |
gttatcaattgtcattttcaatattttcggtgaaagttcatttaacaagttaaaataacatttccctctc |
23873325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 34320725 - 34320771
Alignment:
| Q |
8 |
atgttgaaattggtgtttgagaataaaatttgataattatatttgtg |
54 |
Q |
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| T |
34320725 |
atgttgaaattagtgtttgagaacaaaatttgataattatatttgtg |
34320771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 431
Target Start/End: Original strand, 23873343 - 23873375
Alignment:
| Q |
399 |
atgtgtcgatataaaatttattatgtatataaa |
431 |
Q |
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| T |
23873343 |
atgtgtcgatataaaatttcttatgtatataaa |
23873375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 526
Target Start/End: Original strand, 23874013 - 23874065
Alignment:
| Q |
474 |
atcaaagccaatccgcgcccgccccaatggccaaagagagccacaggttctgc |
526 |
Q |
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| T |
23874013 |
atcaaagccaatccacgcccacaccaacggccaaagagagccgaaggttctgc |
23874065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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