View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18657_high_5 (Length: 518)
Name: NF18657_high_5
Description: NF18657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18657_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 2 - 500
Target Start/End: Complemental strand, 30477991 - 30477497
Alignment:
| Q |
2 |
taagtatcaaaaatatttcctagaatttaattaatgccaatcatatataaaacttccgatatgcttcattttctctcacagaataacattttggaaccat |
101 |
Q |
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| T |
30477991 |
taagtatcaaaaatatttcctagaatttaat----gccaatcatatataaaacttccgatatgcttcattttctctcacagaataacattttggaaccat |
30477896 |
T |
|
| Q |
102 |
ccgtgttgtggggtatgcgaatttctttgatatggggtctgctgaggacccaattattaatgtgtccatgttgtattctaacctagcttatctaaatttg |
201 |
Q |
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| T |
30477895 |
ccgtgttgtggggtatgcgaatttctttgatatggggtctgctgaggacccaattattaatgtgtccttgttgtattctaacctagcttatctaaatttg |
30477796 |
T |
|
| Q |
202 |
aattagtttctatattatatgatttttctttcctcattaatttgtttctcagtgcatggaaggtgcaaatatattagatgaggacaaaaggatatttgtc |
301 |
Q |
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| T |
30477795 |
aattagtttctatattatatgatttttctttcctcattaatttgtttctcagtgcatggaaggtgcaaatatattagatgaggacaaaaggatatttgtc |
30477696 |
T |
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| Q |
302 |
acaatttgaatcatctaataaatgacaataattagggggagcatatttggcagatgatgaaccactagggtccctgcctctctttcattcaactatttga |
401 |
Q |
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| T |
30477695 |
acaatttgaatcatctaataaatgataataattagggggagcatatttggcagatgatgaaccactagggtccctgcctctctttcattcaactatttga |
30477596 |
T |
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| Q |
402 |
tcatacaaataattaaatgtcaagataccttcaactatttaatcaatcatataattattcataaaattcttacacatattgaaatgtattcctacaatg |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30477595 |
tcatacaaataattaaatgtcaagataccttcaactatttaatcaatcatataattattcataaaattcttacacatattgaaatgtattcctacaatg |
30477497 |
T |
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