View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18657_low_1 (Length: 826)

Name: NF18657_low_1
Description: NF18657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18657_low_1
NF18657_low_1
[»] chr3 (8 HSPs)
chr3 (17-816)||(28397465-28398269)
chr3 (289-384)||(36868660-36868755)
chr3 (137-238)||(32490306-32490407)
chr3 (305-414)||(55244107-55244216)
chr3 (137-236)||(44395029-44395128)
chr3 (134-247)||(48221380-48221493)
chr3 (137-271)||(25190978-25191112)
chr3 (185-239)||(27917219-27917273)
[»] chr4 (8 HSPs)
chr4 (289-414)||(10775790-10775915)
chr4 (134-238)||(10776001-10776105)
chr4 (565-655)||(40458356-40458446)
chr4 (191-271)||(1629084-1629164)
chr4 (291-342)||(38571146-38571197)
chr4 (139-169)||(37677453-37677483)
chr4 (590-715)||(68778-68902)
chr4 (304-353)||(20917774-20917823)
[»] scaffold0606 (1 HSPs)
scaffold0606 (146-274)||(9265-9393)
[»] chr5 (8 HSPs)
chr5 (138-266)||(6368479-6368607)
chr5 (137-237)||(43558397-43558497)
chr5 (289-353)||(1525431-1525495)
chr5 (289-343)||(32516347-32516401)
chr5 (182-247)||(3096826-3096891)
chr5 (137-238)||(3301448-3301549)
chr5 (288-353)||(17212870-17212935)
chr5 (137-234)||(21915485-21915582)
[»] chr8 (8 HSPs)
chr8 (124-284)||(25985128-25985287)
chr8 (137-238)||(41444886-41444987)
chr8 (287-343)||(10080342-10080398)
chr8 (314-397)||(5908456-5908539)
chr8 (123-165)||(5057286-5057328)
chr8 (289-335)||(16351178-16351224)
chr8 (284-337)||(25985324-25985377)
chr8 (317-414)||(38328175-38328272)
[»] chr2 (8 HSPs)
chr2 (289-399)||(7292777-7292887)
chr2 (141-247)||(876735-876841)
chr2 (137-234)||(12904568-12904664)
chr2 (119-178)||(14769880-14769939)
chr2 (184-238)||(38453202-38453256)
chr2 (182-271)||(11992655-11992744)
chr2 (137-238)||(24584188-24584289)
chr2 (590-715)||(40446912-40447036)
[»] chr1 (13 HSPs)
chr1 (185-285)||(7921574-7921675)
chr1 (565-711)||(37667798-37667947)
chr1 (134-238)||(40419277-40419381)
chr1 (172-284)||(6640760-6640873)
chr1 (565-655)||(43408466-43408556)
chr1 (590-715)||(337539-337663)
chr1 (289-405)||(6640918-6641035)
chr1 (123-238)||(28528166-28528281)
chr1 (106-169)||(32066919-32066982)
chr1 (313-403)||(7921740-7921830)
chr1 (312-353)||(12262110-12262151)
chr1 (317-402)||(37463247-37463332)
chr1 (303-352)||(43423540-43423589)
[»] chr7 (7 HSPs)
chr7 (123-238)||(43793622-43793737)
chr7 (590-715)||(22077134-22077258)
chr7 (137-238)||(38606605-38606705)
chr7 (317-405)||(24425898-24425986)
chr7 (305-400)||(47235557-47235652)
chr7 (137-238)||(32630206-32630307)
chr7 (357-414)||(42177383-42177440)


Alignment Details
Target: chr3 (Bit Score: 699; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 17 - 816
Target Start/End: Complemental strand, 28398269 - 28397465
Alignment:
Q  17 attttcacgtgttatgcaataaacaatcagtttcgttctcaacgttttttaaaagcatcaattgtgttttcaatttcacgtgttttgcatatgccttcca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  28398269 attttcacgtgttatgcaataaacaatcagtttcgttctcaacgtttttttaaagcatcaattgcgttttca-tttcacgtgttttgcatatgccttcca 28398171  T
Q  117 tatgaatagaagcaaaccatagtatatggaatgcaattttagcaaaa--ggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcac 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28398170 tatgaatagaagcaaaccatagtatatggaatgcaattttagcaaaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcac 28398071  T
Q  215 aagttacacgatttaaatatcttgaatttatagcataaaacgaaggagaaattgaaggagtgtaaaccatcaaatgttttatgtaatgcgaaagtatcgc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28398070 aagttacacgatttaaatatcttgaatttatagcataaaacgaaggagaaattgaaggagtgtaaaccatcaaatgttttatgtaatgcgaaagtatcgc 28397971  T
Q  315 tcaagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggtaaagaaccaacacaaatataaattaag 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28397970 tcaagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggtaaagaaccaacacaaatataaattaag 28397871  T
Q  415 atgtcgatgttcttccttaaatacgagtcatggtaaatatatccccattttcaatagcccaagctgaagccataccctgcatttcttctctcacatacat 514  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||    
T  28397870 atgtcgatgtccttccttaaatacgagtcatggtaaatatatccccattttc-attgcccaagctgaagccataccctgcatttcttctctcacacacat 28397772  T
Q  515 tgaactatgagtgcattatgaacatcaattaatatattctaattcattgattccatgaattcataagttgagtctgttacacattgaaattacattctcc 614  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28397771 tgaactatgagtgcattatgaacatc----aatatattctaattcattgattccatgaattcataagttgactctgttacacattgaaattacattctcc 28397676  T
Q  615 catcaatataattagccaaatcaagaaaacaaactccctccatctccatatggtcacacgcaaactatccccctatcacaatattctcttattatttcct 714  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28397675 catcaatataattagccaaatcttgaaaacaaactccctctatctccatatggtcacacgcaaactatccccctatcacaatattctcttattatttcct 28397576  T
Q  715 agtctcctcatacacatctccatgatt---------cacattttctaagtacatcaattaattcatagcatctattctctcgaaaaattcataatttcga 805  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28397575 agtctcctcatacacatctccatgattcacattttccacattttctaagtacatcaattaattcatagcatctattctctcgaaaaattcataatttcga 28397476  T
Q  806 ctaagtctgtg 816  Q
    |||||||||||    
T  28397475 ctaagtctgtg 28397465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 289 - 384
Target Start/End: Complemental strand, 36868755 - 36868660
Alignment:
Q  289 tgttttatgtaatgcgaaagtatcgctcaagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggat 384  Q
    |||||||||| || |||||||||| | ||| |||||||||||| ||||| ||||||  ||||||||  |||||||| ||| |||||||||||||||    
T  36868755 tgttttatgtgatacgaaagtatcacccaatttgaagggaaaaatttatcggacaattgtaagactgcaaatgttgaatgggacaaagtgttggat 36868660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 32490407 - 32490306
Alignment:
Q  137 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatct 236  Q
    |||||||| ||||||| |||||||||||||||| ||||||||   || || ||||||||    |||||||| || |||||||||||| |||||||| |||    
T  32490407 agtatatgaaatgcaagtttagcaaaaggtgaagtgtttctaacttatagatgaaagttgaagatcatatcataccacaagttacacaatttaaatttct 32490308  T
Q  237 tg 238  Q
    ||    
T  32490307 tg 32490306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 305 - 414
Target Start/End: Original strand, 55244107 - 55244216
Alignment:
Q  305 aaagtatcgctcaagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggtaaagaaccaacacaaat 404  Q
    |||||| | ||||||||||||||||||||||||  |||| | |||||||  | ||||||| ||  ||||||||||||||  || |||||||||||  ||     
T  55244107 aaagtaccactcaagttgaagggaaaattttatctgacagctgtaagaccgacaatgttgtatcggacaaagtgttggactgtcaagaaccaacatgaaa 55244206  T
Q  405 ataaattaag 414  Q
    ||||||||||    
T  55244207 ataaattaag 55244216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 44395029 - 44395128
Alignment:
Q  137 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatct 236  Q
    |||||||||||||||| ||||||||||||  ||   |||||||| ||||| |||||||| |  |||||| |  | | |||||||||||||||||||||||    
T  44395029 agtatatggaatgcaactttagcaaaaggcaaagcatttctagtttagagatgaaagttggagatcataccacaacgcaagttacacgatttaaatatct 44395128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 247
Target Start/End: Original strand, 48221380 - 48221493
Alignment:
Q  134 catagtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaata 233  Q
    ||||||||||| |||| ||||| ||||||||||| | |  |||||   ||||||||||||||    |||||||| || ||||||||||||  ||||||||    
T  48221380 catagtatatgtaatgtaatttcagcaaaaggtgtagtagttctatcttagaggtgaaagttgaagatcatatcataccacaagttacacattttaaata 48221479  T
Q  234 tcttgaatttatag 247  Q
    ||||| ||| ||||    
T  48221480 tcttggattcatag 48221493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 271
Target Start/End: Original strand, 25190978 - 25191112
Alignment:
Q  137 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatct 236  Q
    ||||||||||||| || || ||||||||| ||| ||  ||||   | |||||||||||| |  |||||||| || | ||||||||||| |||||||||||    
T  25190978 agtatatggaatgtaacttcagcaaaaggagaagtgggtctaccttggaggtgaaagttggagatcatatcatagcccaagttacacggtttaaatatct 25191077  T
Q  237 tgaatttatagcataaaacgaaggagaaattgaag 271  Q
    ||  | ||||| | |||| || |||||||| ||||    
T  25191078 tgggtctatagtacaaaatgatggagaaatagaag 25191112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 27917219 - 27917273
Alignment:
Q  185 aggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatcttga 239  Q
    ||||||||||| |  |||||||| |||| ||||||||||| ||||||||||||||    
T  27917219 aggtgaaagttggagatcatatcatatcccaagttacacggtttaaatatcttga 27917273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 6e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 289 - 414
Target Start/End: Complemental strand, 10775915 - 10775790
Alignment:
Q  289 tgttttatgtaatgcgaaagtatcgctcaagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggta 388  Q
    |||||||||| ||||||||| | | |||||||||||||||||||||||||||||||||||||||| ||  |||||| ||| || | ||||||||  ||||    
T  10775915 tgttttatgtgatgcgaaagcacccctcaagttgaagggaaaattttattggacaacggtaagaccaatgatgttgtatgggaaagagtgttgggcggta 10775816  T
Q  389 aagaaccaacacaaatataaattaag 414  Q
    |||||| ||  |||| ||||||||||    
T  10775815 aagaactaatgcaaaaataaattaag 10775790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 10776105 - 10776001
Alignment:
Q  134 catagtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaata 233  Q
    |||| ||||||||||| ||||||||||||||| ||| |||||||||| |||||| ||||||| |  |||||||| || ||||||||||| | ||||||||    
T  10776105 catactatatggaatgtaattttagcaaaaggcgaaatgtttctagtttagaggggaaagttggagatcatatcataccacaagttacatggtttaaata 10776006  T
Q  234 tcttg 238  Q
    |||||    
T  10776005 tcttg 10776001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 565 - 655
Target Start/End: Original strand, 40458356 - 40458446
Alignment:
Q  565 ttccatgaattcataagttgagtctgttacacattgaaattacattctcccatcaatataattagccaaatcaagaaaacaaactccctcc 655  Q
    |||| ||||||||| ||||  ||| |||||||||| |||| ||  |||  |||||||| ||||| ||||||||||||||| ||||||||||    
T  40458356 ttccttgaattcattagtttggtcagttacacattaaaatcactctcttacatcaatacaattatccaaatcaagaaaaccaactccctcc 40458446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 1629084 - 1629164
Alignment:
Q  191 aagtttgttatcatatcttatcacaagttacacgatttaaatatcttgaatttatagcataaaacgaaggagaaattgaag 271  Q
    |||||||  |||||||| |  |||||||||||   ||||||||||||||||| |||| ||||||||| |||||||| ||||    
T  1629084 aagtttgagatcatatcgtgccacaagttacatagtttaaatatcttgaattcatagtataaaacgatggagaaatagaag 1629164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 342
Target Start/End: Complemental strand, 38571197 - 38571146
Alignment:
Q  291 ttttatgtaatgcgaaagtatcgctcaagttgaagggaaaattttattggac 342  Q
    |||||||| |||||||||||  ||||||||||| |||||||||| |||||||    
T  38571197 ttttatgtgatgcgaaagtactgctcaagttgatgggaaaatttcattggac 38571146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 169
Target Start/End: Complemental strand, 37677483 - 37677453
Alignment:
Q  139 tatatggaatgcaattttagcaaaaggtgaa 169  Q
    |||||||||||||||||||||||||||||||    
T  37677483 tatatggaatgcaattttagcaaaaggtgaa 37677453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 590 - 715
Target Start/End: Original strand, 68778 - 68902
Alignment:
Q  590 gttacacattgaaattacattctcccatcaatataattagccaaatcaagaaaacaaactccctccatctccatatggtcacacgcaaactatcccccta 689  Q
    ||||||||||||||| |  |||| ||| ||||||||||||||||| | ||||  |||||||| |||  ||||| |||  || ||||||| | |  ||||     
T  68778 gttacacattgaaatcagtttcttccaccaatataattagccaaacctagaaggcaaactccatccccctccaaatgaccatacgcaaattgt-tccctc 68876  T
Q  690 tcacaatattctcttattatttccta 715  Q
    || |||||||||||||||| ||||||    
T  68877 tcgcaatattctcttattacttccta 68902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 20917774 - 20917823
Alignment:
Q  304 gaaagtatcgctcaagttgaagggaaaattttattggacaacggtaagac 353  Q
    |||||||||  | ||||||||||||||||||||| | |||||||||||||    
T  20917774 gaaagtatcattgaagttgaagggaaaattttatcgaacaacggtaagac 20917823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 146 - 274
Target Start/End: Original strand, 9265 - 9393
Alignment:
Q  146 aatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatcttgaatttat 245  Q
    |||| |||||||||||||||||||||||||||||| ||||||| |||||| |  |||||||| ||| |  ||||||||||||||||||||||   |||||    
T  9265 aatgtaattttagcaaaaggtgaattgtttctagtttagaggtaaaagttggagatcatatcatattattagttacacgatttaaatatcttaggtttat 9364  T
Q  246 agcataaaacgaaggagaaattgaaggag 274  Q
    |  ||||||||| | |||||| |||||||    
T  9365 attataaaacgatgaagaaatggaaggag 9393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 138 - 266
Target Start/End: Complemental strand, 6368607 - 6368479
Alignment:
Q  138 gtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatctt 237  Q
    ||||||||| || ||||||||||| |||||||   |||||| | |||||||||||| | |  |||||| | || |||||||||||| |||||||||||||    
T  6368607 gtatatggattgtaattttagcaagaggtgaaacatttctaatgtagaggtgaaagatggagatcataacataccacaagttacacaatttaaatatctt 6368508  T
Q  238 gaatttatagcataaaacgaaggagaaat 266  Q
    | || ||||| | ||||||| ||||||||    
T  6368507 gtatctatagtacaaaacgacggagaaat 6368479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 43558497 - 43558397
Alignment:
Q  137 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatct 236  Q
    ||||||||||||| |  ||||||||||||  || |||||||||   ||||||||||||| |  |||||| | || |||||||||||||||||||||||||    
T  43558497 agtatatggaatgtagatttagcaaaaggcaaagtgtttctagctcagaggtgaaagttggagatcatagcataccacaagttacacgatttaaatatct 43558398  T
Q  237 t 237  Q
    |    
T  43558397 t 43558397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 353
Target Start/End: Original strand, 1525431 - 1525495
Alignment:
Q  289 tgttttatgtaatgcgaaagtatcgctcaagttgaagggaaaattttattggacaacggtaagac 353  Q
    |||||||||| |||| |||||| |||| |||||||||||||| |||||| | |||||||||||||    
T  1525431 tgttttatgtgatgcaaaagtaccgcttaagttgaagggaaatttttatcgaacaacggtaagac 1525495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 32516347 - 32516401
Alignment:
Q  289 tgttttatgtaatgcgaaagtatcgctcaagttgaagggaaaattttattggaca 343  Q
    |||||||||| || |||||||| ||||| |||||||||||||||| |||||||||    
T  32516347 tgttttatgtgatacgaaagtaccgctctagttgaagggaaaattatattggaca 32516401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 3096826 - 3096891
Alignment:
Q  182 tagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatcttgaatttatag 247  Q
    |||||||||||||| |  ||||||||| | ||||||||||| | |||||||||||||  |||||||    
T  3096826 tagaggtgaaagttagagatcatatctcagcacaagttacatggtttaaatatcttgggtttatag 3096891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 3301448 - 3301549
Alignment:
Q  137 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatct 236  Q
    ||||||||||||| || || ||||||||| ||| ||  ||||   | |||||||||||| |  |||||||| || | ||||||||||| |||||||||||    
T  3301448 agtatatggaatgtaacttcagcaaaaggagaagtgggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatct 3301547  T
Q  237 tg 238  Q
    ||    
T  3301548 tg 3301549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 288 - 353
Target Start/End: Original strand, 17212870 - 17212935
Alignment:
Q  288 atgttttatgtaatgcgaaagtatcgctcaagttgaagggaaaattttattggacaacggtaagac 353  Q
    ||||||||||||||| || |||| | ||||||||||||| ||||| |||| ||||| | |||||||    
T  17212870 atgttttatgtaatgtgatagtaccactcaagttgaaggaaaaatcttatcggacatcagtaagac 17212935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 21915485 - 21915582
Alignment:
Q  137 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatat 234  Q
    ||||||| ||||| ||||||| ||| |||||||   ||||||||  ||||||||||||| |  || ||||| ||  |||||||||||| |||||||||    
T  21915485 agtatattgaatgaaattttaacaagaggtgaagcatttctagtgcagaggtgaaagttcgagattatatcataatacaagttacacggtttaaatat 21915582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 284
Target Start/End: Original strand, 25985128 - 25985287
Alignment:
Q  124 agaagcaaaccatagtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacac 223  Q
    ||||||||  || ||||||||||||| || |||||||| ||| |||   |||||||  |||||||||||||| |  |||||||| || ||||||||||||    
T  25985128 agaagcaagacagagtatatggaatgtaagtttagcaagaggcgaagcatttctagcttagaggtgaaagttgg--atcatatcataccacaagttacac 25985225  T
Q  224 gatttaaatatcttgaatttatagcataaaacgaaggagaaattgaaggag-tgtaaaccat 284  Q
    | ||||||||| ||| || ||||| | ||||  | |||||||| ||||||| ||||||||||    
T  25985226 ggtttaaatatattggatctatagtacaaaaatatggagaaatagaaggagatgtaaaccat 25985287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 41444987 - 41444886
Alignment:
Q  137 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatct 236  Q
    ||||||||||||| ||||||||||||||| |||   ||||||   |||||||||||| | |  |||||||| || ||||||||||  | |||||||||||    
T  41444987 agtatatggaatgtaattttagcaaaaggcgaagcatttctaacttagaggtgaaaggtggagatcatatcataccacaagttacttggtttaaatatct 41444888  T
Q  237 tg 238  Q
    ||    
T  41444887 tg 41444886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 10080398 - 10080342
Alignment:
Q  287 aatgttttatgtaatgcgaaagtatcgctcaagttgaagggaaaattttattggaca 343  Q
    |||||||||||| || |||||||||| |||||||||||  |||| ||||||||||||    
T  10080398 aatgttttatgtgatacgaaagtatcactcaagttgaattgaaatttttattggaca 10080342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 397
Target Start/End: Original strand, 5908456 - 5908539
Alignment:
Q  314 ctcaagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggtaaagaaccaa 397  Q
    |||||||||||||||||| ||||||||| ||| ||| |||||  ||||||| |||  | | |||||||  ||||||||||||||    
T  5908456 ctcaagttgaagggaaaaatttattggataactgtatgactagcaatgttgtatggaaaagagtgttgactggtaaagaaccaa 5908539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 5057286 - 5057328
Alignment:
Q  123 tagaagcaaaccatagtatatggaatgcaattttagcaaaagg 165  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||    
T  5057286 tagaagcaaaccaaagtatattgaatgcaagtttagcaaaagg 5057328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 16351178 - 16351224
Alignment:
Q  289 tgttttatgtaatgcgaaagtatcgctcaagttgaagggaaaatttt 335  Q
    |||||||||| ||| ||||||| ||||||||||||||||||| ||||    
T  16351178 tgttttatgtgatgtgaaagtaacgctcaagttgaagggaaattttt 16351224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 25985324 - 25985377
Alignment:
Q  284 tcaaatgttttatgtaatgcgaaagtatcgctcaagttgaagggaaaattttat 337  Q
    |||| |||||||| | ||||| ||||| |||||||||| |||||||||||||||    
T  25985324 tcaagtgttttatatgatgcggaagtaccgctcaagttaaagggaaaattttat 25985377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 414
Target Start/End: Complemental strand, 38328272 - 38328175
Alignment:
Q  317 aagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggtaaagaaccaacacaaatataaattaag 414  Q
    ||||||||||||||| ||||| | ||||| ||||||| || |||| || | |||| | || |||||   |||||||||||||||||| ||||| ||||    
T  38328272 aagttgaagggaaaaatttatcgaacaacagtaagaccaacaatggtgtacgagatagagagttgggcagtaaagaaccaacacaaacataaagtaag 38328175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 289 - 399
Target Start/End: Original strand, 7292777 - 7292887
Alignment:
Q  289 tgttttatgtaatgcgaaagtatcgctcaagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggta 388  Q
    |||||||| | |||||||||||  ||||||||||||| |||||||| ||  ||||||||||||||  | ||||||| | | ||||| ||||||| ||||     
T  7292777 tgttttatatgatgcgaaagtactgctcaagttgaagagaaaatttcatatgacaacggtaagaccgacaatgttgtacgggacaaggtgttgggtggtg 7292876  T
Q  389 aagaaccaaca 399  Q
    |||||||||||    
T  7292877 aagaaccaaca 7292887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 247
Target Start/End: Original strand, 876735 - 876841
Alignment:
Q  141 tatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatcttgaa 240  Q
    ||||||||| ||||||||| | ||| |||  ||| |||| ||||||||||||||| |  |||||||| || ||||||||||||  ||||||||| ||| |    
T  876735 tatggaatgtaattttagccagaggagaagcgttcctagcatagaggtgaaagttggagatcatatcctaccacaagttacacagtttaaatatgttgga 876834  T
Q  241 tttatag 247  Q
    | |||||    
T  876835 tctatag 876841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 12904568 - 12904664
Alignment:
Q  137 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatat 234  Q
    ||||||| ||||| ||||| ||||||||| |||  ||||||||| |||||||  || || |  |||||||| |||||||||||||||| |||||||||    
T  12904568 agtatatagaatgtaattt-agcaaaaggcgaaacgtttctagtttagaggtacaaattggagatcatatcatatcacaagttacacggtttaaatat 12904664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 14769880 - 14769939
Alignment:
Q  119 tgaatagaagcaaaccatagtatatggaatgcaattttagcaaaaggtgaattgtttcta 178  Q
    |||||||||||||  || ||||||||||||| ||||||||| ||||| ||||| ||||||    
T  14769880 tgaatagaagcaagacagagtatatggaatgtaattttagctaaaggcgaattatttcta 14769939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 38453256 - 38453202
Alignment:
Q  184 gaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatcttg 238  Q
    |||||||||||| |  |||||||| || | |||||||||||||||||||||||||    
T  38453256 gaggtgaaagttggagatcatatcataccccaagttacacgatttaaatatcttg 38453202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 271
Target Start/End: Complemental strand, 11992744 - 11992655
Alignment:
Q  182 tagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatcttgaatttatagcataaaacgaaggagaaattgaag 271  Q
    |||||||||||||| |  |||||||| || | ||||||||||| |||||||||||||  | ||||| | |||| || |||||||| ||||    
T  11992744 tagaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtctatagtacaaaatgatggagaaatagaag 11992655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 24584289 - 24584188
Alignment:
Q  137 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatct 236  Q
    ||||||||||||| || || ||||||||| ||||| | ||||   | |||||||||||| |  ||||||||  | | ||||||||||| |||||||||||    
T  24584289 agtatatggaatgtaacttcagcaaaaggagaattatgtctaccttggaggtgaaagttggagatcatatcagaccgcaagttacacggtttaaatatct 24584190  T
Q  237 tg 238  Q
    ||    
T  24584189 tg 24584188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 590 - 715
Target Start/End: Original strand, 40446912 - 40447036
Alignment:
Q  590 gttacacattgaaattacattctcccatcaatataattagccaaatcaagaaaacaaactccctccatctccatatggtcacacgcaaactatcccccta 689  Q
    ||||||||||||||| |  |||| ||| ||||||||||||||||| | ||||  |||||||| |||  ||||| | | ||| ||||||| | |  ||||     
T  40446912 gttacacattgaaatcagtttcttccaccaatataattagccaaacctagaaggcaaactccatccccctccaaaggatcatacgcaaattgt-tccctc 40447010  T
Q  690 tcacaatattctcttattatttccta 715  Q
    ||||| ||||||||||||| ||||||    
T  40447011 tcacagtattctcttattacttccta 40447036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 285
Target Start/End: Original strand, 7921574 - 7921675
Alignment:
Q  185 aggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatcttgaatttatagcataaaacgaaggagaaattgaaggag-tgtaaacca 283  Q
    ||||||||||| |  ||||||||||| |||||||||||||||||| |||||||| ||  |||| | |||||||  ||||||| ||||||| |||||||||    
T  7921574 aggtgaaagttggagatcatatcttaccacaagttacacgatttatatatcttggatccatagtacaaaacgattgagaaatagaaggagatgtaaacca 7921673  T
Q  284 tc 285  Q
    ||    
T  7921674 tc 7921675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 565 - 711
Target Start/End: Complemental strand, 37667947 - 37667798
Alignment:
Q  565 ttccatgaattcataagttgagtctgttacacattgaaattacattctcccatcaatataattagccaaatcaagaaaacaaactccctccatctccata 664  Q
    |||| ||||||||| ||||  ||| |||||||||| |||| ||  |||  |||||||| ||||| |||||||||||||||||||||||||| | ||||||    
T  37667947 ttccttgaattcattagtttggtcagttacacattaaaatcactctcttacatcaatacaattatccaaatcaagaaaacaaactccctcc-tatccata 37667849  T
Q  665 tggtcacacgcaaactatc----cccctatcacaatattctcttattattt 711  Q
    ||  | ||||||||| |||    ||| ||||||||| ||||| ||||||||    
T  37667848 tgacctcacgcaaaccatcatatcccttatcacaatgttctcctattattt 37667798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 40419277 - 40419381
Alignment:
Q  134 catagtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaata 233  Q
    |||||||||||||||| |||||||||||||||  ||   |||||||  || ||||||||||| |  |||||||| || ||||||||||||  ||||||||    
T  40419277 catagtatatggaatgtaattttagcaaaaggcaaagcatttctagcgtaaaggtgaaagttggagatcatatcataccacaagttacacagtttaaata 40419376  T
Q  234 tcttg 238  Q
    |||||    
T  40419377 tcttg 40419381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 284
Target Start/End: Original strand, 6640760 - 6640873
Alignment:
Q  172 gtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatcttgaatttatagcataaaacgaaggagaaattgaag 271  Q
    ||||||||| |||||||||||||| |  |||||||   | ||||||||||||| |||||||||||||| | ||||| | ||||  | |||||||| ||||    
T  6640760 gtttctagtgtagaggtgaaagttagagatcatattacaccacaagttacacggtttaaatatcttgagtctatagtacaaaattatggagaaatagaag 6640859  T
Q  272 ga-gtgtaaaccat 284  Q
    || |||||||||||    
T  6640860 gaggtgtaaaccat 6640873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 565 - 655
Target Start/End: Complemental strand, 43408556 - 43408466
Alignment:
Q  565 ttccatgaattcataagttgagtctgttacacattgaaattacattctcccatcaatataattagccaaatcaagaaaacaaactccctcc 655  Q
    |||| ||||||||| ||||  ||| |||||||||| |||| ||  |||  |||||||| ||||| ||||||||||||||| ||||||||||    
T  43408556 ttccttgaattcattagtttggtcagttacacattaaaatcactctcttacatcaatacaattatccaaatcaagaaaaccaactccctcc 43408466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 590 - 715
Target Start/End: Original strand, 337539 - 337663
Alignment:
Q  590 gttacacattgaaattacattctcccatcaatataattagccaaatcaagaaaacaaactccctccatctccatatggtcacacgcaaactatcccccta 689  Q
    ||||||||||||||| |  |||| ||| ||||||||||||||||| | ||||  |||||||| |||  ||||| | | ||| ||||||| |||  ||||     
T  337539 gttacacattgaaatcagtttcttccaccaatataattagccaaacctagaaggcaaactccatccccctccaaaggatcatacgcaaattat-tccctc 337637  T
Q  690 tcacaatattctcttattatttccta 715  Q
    ||||| ||||||||||||| ||||||    
T  337638 tcacagtattctcttattacttccta 337663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 405
Target Start/End: Original strand, 6640918 - 6641035
Alignment:
Q  289 tgttttatgtaatgcgaaagtatcgctcaagttgaagggaaa-attttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggt 387  Q
    |||||||||| || |||||||| |||| ||||||||||||||  |||||| ||||||| ||||| |  |  |||||| | ||| |||||||||||| | |    
T  6640918 tgttttatgtgatccgaaagtaccgcttaagttgaagggaaattttttatcggacaactgtaagtccgacgatgttgtacgaggcaaagtgttggacgat 6641017  T
Q  388 aaagaaccaacacaaata 405  Q
     |||||||||||| ||||    
T  6641018 gaagaaccaacacgaata 6641035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 28528166 - 28528281
Alignment:
Q  123 tagaagcaaaccatagtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttaca 222  Q
    |||||||||  || ||||||||| ||  | ||||||||| ||| |||  ||||||||  |||||||||||||| |  |||||| | || |||||||||||    
T  28528166 tagaagcaagacaaagtatatgggatatagttttagcaagaggcgaagcgtttctagcctagaggtgaaagttggagatcatagcataccacaagttaca 28528265  T
Q  223 cgatttaaatatcttg 238  Q
    |  |||||||||||||    
T  28528266 cagtttaaatatcttg 28528281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 32066982 - 32066919
Alignment:
Q  106 tatgccttccatatgaatagaagcaaaccatagtatatggaatgcaattttagcaaaaggtgaa 169  Q
    |||| ||| ||||||| ||||||||   ||||||||||| |||| |||||||||||||||||||    
T  32066982 tatgactttcatatgagtagaagcatgacatagtatatgtaatgtaattttagcaaaaggtgaa 32066919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 313 - 403
Target Start/End: Original strand, 7921740 - 7921830
Alignment:
Q  313 gctcaagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggtaaagaaccaacacaaa 403  Q
    |||||||||||||||||||||||  || ||| |  ||||||  | ||||||| |||  |||||||||||| | |||||||||| |||||||    
T  7921740 gctcaagttgaagggaaaattttcctgaacatctataagaccgacaatgttgtatggtacaaagtgttgggttgtaaagaaccgacacaaa 7921830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 12262151 - 12262110
Alignment:
Q  312 cgctcaagttgaagggaaaattttattggacaacggtaagac 353  Q
    |||| |||||||||||||||||||||| ||||| ||||||||    
T  12262151 cgcttaagttgaagggaaaattttatttgacaatggtaagac 12262110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 402
Target Start/End: Complemental strand, 37463332 - 37463247
Alignment:
Q  317 aagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggtaaagaaccaacacaa 402  Q
    |||||||| |||||||| |||  |||||| || ||||||  ||||||| |||  ||| |||||||| |||| ||||||||||||||    
T  37463332 aagttgaaaggaaaattctatcagacaacagtcagactagcaatgttgtatggtacagagtgttgggtggttaagaaccaacacaa 37463247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 43423540 - 43423589
Alignment:
Q  303 cgaaagtatcgctcaagttgaagggaaaattttattggacaacggtaaga 352  Q
    |||||||||  ||||||||||||| ||| |||||||||||||| ||||||    
T  43423540 cgaaagtatgactcaagttgaaggaaaagttttattggacaactgtaaga 43423589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 238
Target Start/End: Complemental strand, 43793737 - 43793622
Alignment:
Q  123 tagaagcaaaccatagtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttaca 222  Q
    |||||||||  || |||||| |||||| || |||||||| ||| |||  ||||| ||| |||||||||||||| |  |||||||| || ||| |||||||    
T  43793737 tagaagcaagacagagtatacggaatgtaaatttagcaagaggcgaagcgtttcgagtgtagaggtgaaagttagagatcatatcataccactagttaca 43793638  T
Q  223 cgatttaaatatcttg 238  Q
    |  |||||||||||||    
T  43793637 cattttaaatatcttg 43793622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 590 - 715
Target Start/End: Original strand, 22077134 - 22077258
Alignment:
Q  590 gttacacattgaaattacattctcccatcaatataattagccaaatcaagaaaacaaactccctccatctccatatggtcacacgcaaactatcccccta 689  Q
    ||||||||||||||| |  |||| ||| ||||||||||||||||| | ||||  |||||||| |||  ||||| |||  || ||||||| | |  ||||     
T  22077134 gttacacattgaaatcagtttcttccaccaatataattagccaaacctagaaggcaaactccatccccctccaaatgaccatacgcaaattgt-tccctc 22077232  T
Q  690 tcacaatattctcttattatttccta 715  Q
    ||||||||||||||||||| ||||||    
T  22077233 tcacaatattctcttattacttccta 22077258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 38606605 - 38606705
Alignment:
Q  137 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatct 236  Q
    ||||||||||||| |||||| |||||||| ||| ||  ||||   | |||||||||||| |  |||||||| |||| ||||||||||| |||||||||||    
T  38606605 agtatatggaatgtaatttttgcaaaaggagaagtgggtctacctt-gaggtgaaagttggagatcatatcatatcccaagttacacggtttaaatatct 38606703  T
Q  237 tg 238  Q
    ||    
T  38606704 tg 38606705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 317 - 405
Target Start/End: Complemental strand, 24425986 - 24425898
Alignment:
Q  317 aagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggtaaagaaccaacacaaata 405  Q
    ||||||||||||||||| ||||||||||| || ||||  |  |||||| |||| ||||| |||||  |||| || ||||||||||||||    
T  24425986 aagttgaagggaaaattctattggacaactgttagaccgatgatgttgtatgaaacaaaatgttgagtggttaataaccaacacaaata 24425898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 400
Target Start/End: Original strand, 47235557 - 47235652
Alignment:
Q  305 aaagtatcgctcaagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggtaaagaaccaacac 400  Q
    |||||| |||| |||||||||| |||||||||||||||||   | ||||| | |||| || |||||||  |||||||   ||||||||||||||||    
T  47235557 aaagtaccgcttaagttgaaggtaaaattttattggacaattatcagactgacaatgctgtatgagacggagtgttgagcggtaaagaaccaacac 47235652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 32630206 - 32630307
Alignment:
Q  137 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatct 236  Q
    ||||||||||||| || || ||||||||| ||| ||  ||||   | |||||||||||| |  |||||||| || | ||||||||||| |||||||||||    
T  32630206 agtatatggaatgtaacttcagcaaaaggagaagtgggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatct 32630305  T
Q  237 tg 238  Q
    ||    
T  32630306 tg 32630307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 414
Target Start/End: Complemental strand, 42177440 - 42177383
Alignment:
Q  357 aaatgttgcatgagacaaagtgttggatggtaaagaaccaacacaaatataaattaag 414  Q
    |||||||| ||| ||||||||||||||  |||||| |||||||| || ||||||||||    
T  42177440 aaatgttgtatgggacaaagtgttggactgtaaaggaccaacacgaaaataaattaag 42177383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University