View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18657_low_10 (Length: 443)
Name: NF18657_low_10
Description: NF18657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18657_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 11 - 426
Target Start/End: Original strand, 3922851 - 3923266
Alignment:
| Q |
11 |
caaaggtctgccgtataatgcacacttattaaatatagactcaaatggaaaagtaaatgtagactgagatgtccaagtaaacttcactgccaaatggatt |
110 |
Q |
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| T |
3922851 |
caaaggtctgccgtataatgcacacttattaaatatagactcaaatggaaaagtaaatgtagactgagatgtccaagtaaacttcactgccaaatggatt |
3922950 |
T |
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| Q |
111 |
tcacccatcttagttacaccagagggatgtaaacctataagagggtaagaatgtgcatacactttgccgttttcaagtgttgatagacgaatccttatct |
210 |
Q |
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| T |
3922951 |
tcacccatcttagttacaccagagggatgtaaacctataagagggtaagaatgtgcatacactttgccgttttcaagtgttgatagacgaatccttatct |
3923050 |
T |
|
| Q |
211 |
tagccattatagtatctcttgcacctctggctctactttcaggatctaactgattgttatcaaaaactccaatagtaatgactgtgaatggctcataaac |
310 |
Q |
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| T |
3923051 |
tagccattatagtatctcttgcacctctggctctactttcaggatctaactgattgttatcaaaaactccaatagtaatgactgtgaatggctcataaac |
3923150 |
T |
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| Q |
311 |
ttcccaaacatattgctcattccatcttggttcacggctgtcaacactggttcttgtccttacccattttggtccatatttcgccacacaatatgcatcg |
410 |
Q |
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| T |
3923151 |
ttcccaaacatattgctcattccatcttggttcacggctgtcaacacttgttcttgtccttacccattttggtccatatttcgccacacaatatgcatcg |
3923250 |
T |
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| Q |
411 |
gttctccccccaatct |
426 |
Q |
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| T |
3923251 |
gttctccccccaatct |
3923266 |
T |
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Back To:
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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 414
Target Start/End: Original strand, 27253646 - 27253757
Alignment:
| Q |
303 |
tcataaacttcccaaacatattgctcattccatcttggttcacggctgtcaacactggttcttgtccttacccattttggtccatatttcgccacacaat |
402 |
Q |
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| T |
27253646 |
tcataaacttcccaagtatattgctcattccaccttggtgaaagactatcaacaatagtccttgttctcacccatttagaaccatacttagctacacaat |
27253745 |
T |
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| Q |
403 |
atgcatcggttc |
414 |
Q |
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|||| ||||||| |
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| T |
27253746 |
atgcgtcggttc |
27253757 |
T |
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