View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18657_low_13 (Length: 436)
Name: NF18657_low_13
Description: NF18657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18657_low_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Complemental strand, 31452284 - 31451867
Alignment:
| Q |
19 |
gttgagatccatattatcaccccacattgcccattcttcaaattcctttcatgagcatttggagacctagaattgaaatccatatcaactagggatgtgg |
118 |
Q |
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| T |
31452284 |
gttgagatccatattattaccccacattgcccattcttcaaattcctttcatgagcatttggagacctagaattgaaatccatatcaactagggatgtgg |
31452185 |
T |
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| Q |
119 |
aaaaattaatccttataaagtttgggaaatcattgccccttcagctagcttttggattgaattaaagctcaatatataagagtaataattaaaatttctc |
218 |
Q |
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| T |
31452184 |
aaaaattaatccttataaagtttgggaaatcattgccccttcagctagcttttggattgaattaaagctcaatatataagagtaataattaaaatttctc |
31452085 |
T |
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| Q |
219 |
aattgttgaaataaaatgatttgactaacctacacaatggatatacacgctactcacagacttaccaacacgaaccacccattttcaagaagtataatcg |
318 |
Q |
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| T |
31452084 |
aattgttgaaataaaatgatttgactaacctacacgatggatatacacgctactcacagacttacgaacacgaaccacccattttcaagaagtataatcg |
31451985 |
T |
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| Q |
319 |
tgtagactacgtcgacattaaaatttacagattacaaagggaaaggagtacttgattaaaaactacagaaccaaatagttaaaagtctggatatatggaa |
418 |
Q |
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| T |
31451984 |
tgtagactacgtcgacattaaaatttacagattacaaagggaaaggagtacttgattcaaacctacagaaccaaatagttaaaagtctggatatatggaa |
31451885 |
T |
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| Q |
419 |
ttattcaactcaacttac |
436 |
Q |
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| T |
31451884 |
ttattcaactcaacttac |
31451867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 31465373 - 31465116
Alignment:
| Q |
19 |
gttgagatccatattatcaccccacattgcccattcttcaaat-tcctttcatgagcatttggagacctagaattgaaatcc-atatcaactagggatgt |
116 |
Q |
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|||||||||||| |||| | |||||||| || |||||||| ||||||| ||||||||||||| ||| |||| |||| ||||||||||| |||| |
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| T |
31465373 |
gttgagatccatgttattccaccacattgtccccacttcaaatgtcctttcttgagcatttggagg---agagttgagatcccatatcaactagatatgt |
31465277 |
T |
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| Q |
117 |
ggaaaaattaatccttataaagtttgggaaatcattgccccttcagctagcttttggattgaattaaagctcaatatataagagtaataattaaaatttc |
216 |
Q |
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|| ||||||||||||||| |||||||| |||||| ||| ||||||||||||| || | |||||||||||||| ||||||||||||| ||| || || |
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| T |
31465276 |
ggcaaaattaatccttatgaagtttggacaatcatcaccctttcagctagctttcggttggaattaaagctcaaaatataagagtaatgatttaacaatc |
31465177 |
T |
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| Q |
217 |
tcaattgttgaaataaaatgatttgactaacctacacaatggatatacacgctactcacag |
277 |
Q |
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| T |
31465176 |
ccaattgctgtaattatatgatttgactaacctatacaatgaatatagacactactcacag |
31465116 |
T |
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