View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18657_low_14 (Length: 431)
Name: NF18657_low_14
Description: NF18657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18657_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 13 - 423
Target Start/End: Original strand, 43535238 - 43535648
Alignment:
| Q |
13 |
catcataagtaggatacattgacaaggaaggaatgaacctaggctcagcaatgaaagtacgaaacgcaagtgatatagcaagagcagcaaacacagtttt |
112 |
Q |
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| T |
43535238 |
catcataagtaggatacattgacaaggaaggaatgaacctaggctcagcaatgaaagtacgaaacgcaagtgatatagcaagagcagcaaacacagtttt |
43535337 |
T |
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| Q |
113 |
cgcatcatcagaagtaaaattcaaccaatcaggaaaaggtcccgacgactcatttttcttatccacatcccggtcaccaccaccaccgtcgccgtcacct |
212 |
Q |
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| T |
43535338 |
cgcatcatcagaagtaaaattcaaccaatcaggaaaaggtcccgacgactcatttttcttatccacctcccggtcaccaccaccaccgtcgccgccacct |
43535437 |
T |
|
| Q |
213 |
ccgccggagtctttcaaagctttactacatggaattctacggcgaagagttgaagaggttttgtagagatggggaaaggtaggatgagagcgtggtggtg |
312 |
Q |
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| T |
43535438 |
ccgccggagtctttcaaagctttactacatggaattctacggcgaagagttgaagaggttttgtagagatggggaaaggtaggatgagagcgtggtggag |
43535537 |
T |
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| Q |
313 |
aagagagtcttcttgaattaaaatggaatttagggaatttgattggattgaagagatgagcatggttggagtttggggtttgaagtgaagggaagataga |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43535538 |
aagagagtcttcttgaattaaaatggaatttagggaatttgattggattgaagagatgagcatggttggagtttggggtttgaagtgaagggaagataga |
43535637 |
T |
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| Q |
413 |
gaatgatgatg |
423 |
Q |
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| T |
43535638 |
gaatgatgatg |
43535648 |
T |
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