View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18657_low_19 (Length: 342)
Name: NF18657_low_19
Description: NF18657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18657_low_19 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 342
Target Start/End: Original strand, 31451488 - 31451820
Alignment:
| Q |
12 |
aagaatatggctgtcaacaatggttcaattatcattagggtgttttaaattggggatctgcagaaggatgacattgttcttctgagtat--ttacttctg |
109 |
Q |
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| T |
31451488 |
aagaatatggctgtcaacaatggttcaattatcattagggtgttttaaattggggatctgcaaaaggatgacattgttcttctgaatatatttacttctg |
31451587 |
T |
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| Q |
110 |
tccctccatttttagttggactgtggggattgtttatttaattatcttatgtacttctttctcttaatgatttttcggttaataaaaaggcatttaaatg |
209 |
Q |
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| T |
31451588 |
tccctccatttttagttggactgtggggattgtttatttaattatcttatgtacttctttctcttaatgatttttcggttaataaaaaggcatttaaatg |
31451687 |
T |
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| Q |
210 |
aatatttgaaatctgtgtaaaactattcattcatttgctcaccttttccgaaagtgtagaaaggcctcagtggtggattgagggtcatcaaacacatgca |
309 |
Q |
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| T |
31451688 |
aatatttggaatctgtgtaaaactattcattcattttctcaccttttccgaaagtgtagaaaggcctcagtggtggattgagggtcatcaaaaacatgca |
31451787 |
T |
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| Q |
310 |
agatgccaacgtaatgcctgattcacagacttt |
342 |
Q |
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| T |
31451788 |
agatgccaacgtaatgcctgattcacagacttt |
31451820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 12 - 342
Target Start/End: Original strand, 31464578 - 31464911
Alignment:
| Q |
12 |
aagaatatggctgtcaacaatggttcaattatcattagggtgttttaaattggggatctgcagaaggatgacattgttcttctgagt--atttacttctg |
109 |
Q |
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| T |
31464578 |
aagaatatggctgtcaataatggttcaattatcattagggggttttcaattgcggatctgcagaaggatcacatagttcttttgagtttatttacttttc |
31464677 |
T |
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| Q |
110 |
tccc-tccatttttagttggactgtggggattgtttatttaattatcttatgtacttctttctcttaatgatttttcggttaataaaaaggcatttaaat |
208 |
Q |
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| T |
31464678 |
ccccctccatttttagtttgtatggggggattgtttatttaattatttcatttacttctttctcttgatgaattctcattcaattaaaaagcatttaaat |
31464777 |
T |
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| Q |
209 |
gaatatttgaaatctgtgtaaaactattcattcatttgctcaccttttccgaaagtgtagaaaggcctcagtggtggattgagggtcatcaaacacatgc |
308 |
Q |
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| T |
31464778 |
gaatatatggaacatgtttaaaataattcattcattttctcaccttttccgaaattgtagaaaaacatcagtggtgccttaagggtcctcaaacacatgc |
31464877 |
T |
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| Q |
309 |
aagatgccaacgtaatgcctgattcacagacttt |
342 |
Q |
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| T |
31464878 |
aagaggccaatgtaaagcctgattcacagacttt |
31464911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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