View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18657_low_24 (Length: 261)

Name: NF18657_low_24
Description: NF18657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18657_low_24
NF18657_low_24
[»] chr5 (8 HSPs)
chr5 (2-107)||(972722-972827)
chr5 (172-251)||(972892-972971)
chr5 (173-251)||(7982368-7982446)
chr5 (174-230)||(41264539-41264595)
chr5 (183-233)||(39730312-39730362)
chr5 (178-239)||(2243316-2243377)
chr5 (174-243)||(14138555-14138624)
chr5 (174-239)||(37077770-37077835)
[»] chr3 (3 HSPs)
chr3 (183-251)||(20519284-20519352)
chr3 (184-237)||(42091793-42091846)
chr3 (174-239)||(13283840-13283905)
[»] chr7 (5 HSPs)
chr7 (178-250)||(23944090-23944162)
chr7 (184-239)||(34891553-34891608)
chr7 (186-242)||(3191564-3191620)
chr7 (178-238)||(33192336-33192396)
chr7 (183-251)||(44754930-44754998)
[»] chr4 (4 HSPs)
chr4 (175-239)||(15131575-15131639)
chr4 (197-251)||(25062352-25062406)
chr4 (173-249)||(20512817-20512893)
chr4 (35-91)||(25062245-25062301)
[»] chr2 (4 HSPs)
chr2 (174-249)||(16863466-16863541)
chr2 (174-237)||(38576939-38577002)
chr2 (174-239)||(16576258-16576323)
chr2 (202-243)||(34176742-34176783)
[»] chr1 (5 HSPs)
chr1 (184-243)||(10775037-10775096)
chr1 (174-239)||(52432671-52432736)
chr1 (188-239)||(3367806-3367857)
chr1 (178-239)||(68111-68172)
chr1 (185-250)||(7749024-7749089)
[»] chr8 (3 HSPs)
chr8 (173-239)||(37010345-37010411)
chr8 (184-243)||(32166631-32166690)
chr8 (173-239)||(6630539-6630605)
[»] chr6 (2 HSPs)
chr6 (178-246)||(7556109-7556177)
chr6 (183-237)||(32047193-32047247)
[»] scaffold0136 (1 HSPs)
scaffold0136 (202-243)||(36969-37010)


Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 972722 - 972827
Alignment:
Q  2 gatgatgatctctatttatattatttttgtatgttttttcgacgttatcccttaatgatttgggggtaatttatccatttcaaagaaaaaattcattttc 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  972722 gatgatgatctctatttatattatttttgtatgttttttcgacgttatcccttaatgatttgggggtaatttatccatttcaaagaaaaaattcattttt 972821  T
Q  102 ttcctc 107  Q
    ||||||    
T  972822 ttcctc 972827  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 972892 - 972971
Alignment:
Q  172 gaaatcagttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatcttcatatcctttg 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  972892 gaaatcagttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgttatcttcataccctttg 972971  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 7982446 - 7982368
Alignment:
Q  173 aaatcagttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatcttcatatcctttg 251  Q
    ||||||||| |||||||||||   |||| |||||||||||||  ||||||| ||||||||||||| ||||| |||||||    
T  7982446 aaatcagttaccattttcatcttgagaacatcaaatttcttcgactctttcttttaacatgtgatattcatctcctttg 7982368  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 41264539 - 41264595
Alignment:
Q  174 aatcagttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaac 230  Q
    |||||||| | ||||||||  |||||| |||||||||||||||||||||||||||||    
T  41264539 aatcagttacaattttcatatcaagaacatcaaatttcttcatctctttcatttaac 41264595  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 39730362 - 39730312
Alignment:
Q  183 ccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatg 233  Q
    ||||||||||| |||||| |||||| || ||||||||||||||||||||||    
T  39730362 ccattttcatctcaagaacatcaaactttttcatctctttcatttaacatg 39730312  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 2243377 - 2243316
Alignment:
Q  178 agttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatct 239  Q
    |||| ||||||||||| |||||| |||||| |||||||| || |||||| ||||||||||||    
T  2243377 agttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatct 2243316  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 14138555 - 14138624
Alignment:
Q  174 aatcagttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatcttcat 243  Q
    ||||| || |||||||||||  ||||| |||||| ||  |||||||||||||| ||||||| ||||||||    
T  14138555 aatcaattaccattttcatcttaagaatatcaaactttctcatctctttcattcaacatgtaatcttcat 14138624  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 37077770 - 37077835
Alignment:
Q  174 aatcagttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatct 239  Q
    ||||||||  |||||||||| ||| || |||||||||||| || | ||||||| ||||||||||||    
T  37077770 aatcagttagcattttcatctcaaaaacatcaaatttcttaatttttttcattcaacatgtgatct 37077835  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 20519352 - 20519284
Alignment:
Q  183 ccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatcttcatatcctttg 251  Q
    ||||||||||| ||||||  |||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  20519352 ccattttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtgatctccatctcctttg 20519284  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 42091846 - 42091793
Alignment:
Q  184 cattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgat 237  Q
    |||||||||| ||| || |||||| || ||||||||||||||||||||||||||    
T  42091846 cattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtgat 42091793  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 13283905 - 13283840
Alignment:
Q  174 aatcagttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatct 239  Q
    ||||| |||| |||||||||||||||| |||||| || |||| ||| |||||| ||| ||||||||    
T  13283905 aatcaattgctattttcatcacaagaacatcaaacttattcaactcattcattcaacgtgtgatct 13283840  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 23944090 - 23944162
Alignment:
Q  178 agttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatcttcatatccttt 250  Q
    ||||||||||||||||  ||||| |||||| |||||| ||||||||||| |||||||||| | ||| ||||||    
T  23944090 agttgccattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtgatttccatctccttt 23944162  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 34891553 - 34891608
Alignment:
Q  184 cattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatct 239  Q
    |||||| ||| |||||| |||||||||||||||||| |||||| ||||||||||||    
T  34891553 cattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatct 34891608  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 3191620 - 3191564
Alignment:
Q  186 ttttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatcttca 242  Q
    |||||||| ||| || |||||| ||||||||||| || ||| |||||||||||||||    
T  3191620 ttttcatctcaaaaacatcaaagttcttcatctcctttattcaacatgtgatcttca 3191564  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 33192396 - 33192336
Alignment:
Q  178 agttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatc 238  Q
    |||| |||||||| || |||||| || ||||||||| |||||||||||| |||| ||||||    
T  33192396 agttaccattttcttctcaagaatattaaatttctttatctctttcattcaacaagtgatc 33192336  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 44754930 - 44754998
Alignment:
Q  183 ccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatcttcatatcctttg 251  Q
    ||||||||||  | |||| |||||| |||||| | | ||||||| |||||||||||||||| |||||||    
T  44754930 ccattttcatttctagaacatcaaacttcttcctttatttcattcaacatgtgatcttcatctcctttg 44754998  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 15131639 - 15131575
Alignment:
Q  175 atcagttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatct 239  Q
    ||||||| ||||||| ||| |||||| |||||||||||||||||| |||||| | ||||||||||    
T  15131639 atcagttaccatttttatctcaagaacatcaaatttcttcatctccttcattcagcatgtgatct 15131575  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 25062352 - 25062406
Alignment:
Q  197 agaaaatcaaatttcttcatctctttcatttaacatgtgatcttcatatcctttg 251  Q
    |||| |||||| ||||||||||  |||||| |||||||||||||||| |||||||    
T  25062352 agaacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctcctttg 25062406  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 20512893 - 20512817
Alignment:
Q  173 aaatcagttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatcttcatatcctt 249  Q
    |||||| ||| ||||||||||  |  || |||||| ||||||||||  |||||||||||||| |||| |||||||||    
T  20512893 aaatcaattgtcattttcatcttataaacatcaaacttcttcatcttcttcatttaacatgtaatctccatatcctt 20512817  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 25062245 - 25062301
Alignment:
Q  35 ttttttcgacgttatcccttaatgatttgggggtaatttatccatttcaaagaaaaa 91  Q
    ||||||| || ||| || ||| |||||||||||||||||| |||| |||||||||||    
T  25062245 ttttttctacattaccctttactgatttgggggtaatttacccatatcaaagaaaaa 25062301  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 16863466 - 16863541
Alignment:
Q  174 aatcagttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatcttcatatcctt 249  Q
    |||||||| ||||||||||| |||||| |||||||||||||||||  || ||| || ||||||||| ||| |||||    
T  16863466 aatcagttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatctcctt 16863541  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 38577002 - 38576939
Alignment:
Q  174 aatcagttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgat 237  Q
    |||||||| |||||||||||  ||||| || ||| |||||||||||||||||| ||||||||||    
T  38577002 aatcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgat 38576939  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 16576258 - 16576323
Alignment:
Q  174 aatcagttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatct 239  Q
    ||||| || |||||||| || |||||| |||||| ||||||||||| |||||| ||||||||||||    
T  16576258 aatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatct 16576323  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 34176742 - 34176783
Alignment:
Q  202 atcaaatttcttcatctctttcatttaacatgtgatcttcat 243  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  34176742 atcaaaattcttcatctccttcatttaacatatgatcttcat 34176783  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 10775037 - 10775096
Alignment:
Q  184 cattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatcttcat 243  Q
    |||||||||| | |||| ||||||||||||| ||| ||||||| ||||||||||||||||    
T  10775037 cattttcatctccagaacatcaaatttcttcgtctgtttcattcaacatgtgatcttcat 10775096  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 52432671 - 52432736
Alignment:
Q  174 aatcagttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatct 239  Q
    ||||| || ||||||||||| |||||| || ||| ||||||||||| ||||||||||| |||||||    
T  52432671 aatcaattaccattttcatctcaagaacattaaacttcttcatctccttcatttaacaagtgatct 52432736  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 3367806 - 3367857
Alignment:
Q  188 ttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatct 239  Q
    |||||| |||||| ||||||||| |||||||| |||||| ||||||||||||    
T  3367806 ttcatctcaagaacatcaaattttttcatctcattcattcaacatgtgatct 3367857  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 68111 - 68172
Alignment:
Q  178 agttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatct 239  Q
    |||| ||||||| ||  |||||| ||| || ||||||||||| |||||||||||||||||||    
T  68111 agttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatct 68172  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 7749024 - 7749089
Alignment:
Q  185 attttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatcttcatatccttt 250  Q
    ||||||||| |||||| ||||||||||||||| |  ||  ||||||||||||||| ||| ||||||    
T  7749024 attttcatctcaagaacatcaaatttcttcattttctttgtttaacatgtgatctccatctccttt 7749089  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 37010411 - 37010345
Alignment:
Q  173 aaatcagttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatct 239  Q
    |||| |||| ||||||||||| ||| || |||||| || ||||| ||||||||||||||||||||||    
T  37010411 aaattagttaccattttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtgatct 37010345  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 32166690 - 32166631
Alignment:
Q  184 cattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatcttcat 243  Q
    |||||||||| |||||| |||||| ||||||||||| || ||| ||||||| ||||||||    
T  32166690 cattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcat 32166631  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 6630605 - 6630539
Alignment:
Q  173 aaatcagttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatct 239  Q
    |||||| || |||||||||||  ||||  || ||||||||||||||| ||||||||||| |||||||    
T  6630605 aaatcaattaccattttcatcttaagatcattaaatttcttcatctccttcatttaacaagtgatct 6630539  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 7556177 - 7556109
Alignment:
Q  178 agttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgatcttcatatc 246  Q
    ||||| |||||||||| |||||| || |||||| ||||| || |||||| |||||||||||||| ||||    
T  7556177 agttgtcattttcatctcaagaacattaaatttattcatatcattcattcaacatgtgatcttcctatc 7556109  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 32047193 - 32047247
Alignment:
Q  183 ccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgtgat 237  Q
    ||||||||||| |||||| |||||| ||||||||||| |||||| ||||| ||||    
T  32047193 ccattttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgat 32047247  T

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Target: scaffold0136 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 37010 - 36969
Alignment:
Q  202 atcaaatttcttcatctctttcatttaacatgtgatcttcat 243  Q
    |||||||||||||||||| || ||| ||||||||||||||||    
T  37010 atcaaatttcttcatctcgtttattcaacatgtgatcttcat 36969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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