View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18657_low_3 (Length: 624)
Name: NF18657_low_3
Description: NF18657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18657_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 71 - 610
Target Start/End: Complemental strand, 39281896 - 39281351
Alignment:
| Q |
71 |
tgaactcaattgattctcagcagcacaaaatctgctgaaacaatacatttgcttctaccatcaacgtacttgcagtctgacaaactctgacattt---ga |
167 |
Q |
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| T |
39281896 |
tgaactcaattgattctcagcagcacaaaatctgctgaaacaatacatttgcttctgccatcaacgtacttgcagtctgacaaactctgacatttactga |
39281797 |
T |
|
| Q |
168 |
gaaggagcacatgattaatttattgagatttcatctgacacaaaaatttggtaaggttttnnnnnnnnnn-ttaacacaagaattcgacgccacagctct |
266 |
Q |
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| T |
39281796 |
gaaggagcagatgattaatttattgagatttcatctgacacaaaaatttggtaaggttttaaaaaaaaaaattaacacaagagttcgacgccacagctct |
39281697 |
T |
|
| Q |
267 |
tgcaacgtgcagttatgtatggcaagaatgaaatccttcaaaagtgatgtatctacagtgaaatttccacttaccgctatgtgaagattattgatgatgg |
366 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39281696 |
tgcaacgtgcagttatgtatggcaaaaacgaaatccttcaaaagtgatgtatctacagcaaaatttccacttaccgctatgtgaagattattgatgatgg |
39281597 |
T |
|
| Q |
367 |
atggtggaaagccaaaaatctaacacataaatatggcaatgcatcctatggatgaaacgtggcggataatagcggctagccaaaagccccaatttcccat |
466 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39281596 |
atggtggaaagccaaaaatctgccacataaatatggcaatgcatcctatggatgaaacgtggcggataatagcggctagccaaaagccccaatttcccat |
39281497 |
T |
|
| Q |
467 |
gagaatagtaaattgctcagaataagaattac--tatctgacaattcaaatcaatgagaattataaagtgaatctcttatggcaggagttttaaaacacc |
564 |
Q |
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| T |
39281496 |
gagaatagtaaattgctcagaatcagaattactatatcagacaattcaaatcaacgagaattatacagtgaatctcttatggcaggagttttaaaacacc |
39281397 |
T |
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| Q |
565 |
aaattggccttttaacgagatgaagctctctgttccaccaaataaa |
610 |
Q |
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| T |
39281396 |
aaattggccttttaacgagatgaagctctctgttccaccaaataaa |
39281351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 360 - 481
Target Start/End: Original strand, 17348529 - 17348648
Alignment:
| Q |
360 |
atgatggatggtggaaagccaaaaatctaacacataaatatggcaatgcatcctatggatgaaacgtggcggataatagcggctagccaaaagccccaat |
459 |
Q |
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||||||||||||||| ||| |||||| || |||| ||||||||||||||| ||| ||||||||| ||||||||| || | |||||| ||||| || || |
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| T |
17348529 |
atgatggatggtggatagctaaaaattta-cacacaaatatggcaatgcaccctttggatgaaatgtggcggattatggaggctag-taaaagtcctgat |
17348626 |
T |
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| Q |
460 |
ttcccatgagaatagtaaattg |
481 |
Q |
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| T |
17348627 |
ttgccatgagaatagtaaattg |
17348648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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