View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18657_low_6 (Length: 512)

Name: NF18657_low_6
Description: NF18657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18657_low_6
NF18657_low_6
[»] chr1 (31 HSPs)
chr1 (1-360)||(1181262-1181607)
chr1 (1-240)||(30703114-30703353)
chr1 (106-360)||(16313901-16314141)
chr1 (103-360)||(12067843-12068092)
chr1 (214-360)||(7014952-7015098)
chr1 (1-210)||(23943419-23943618)
chr1 (214-360)||(30702952-30703098)
chr1 (215-360)||(49000747-49000892)
chr1 (165-360)||(33296425-33296619)
chr1 (154-349)||(36182824-36183019)
chr1 (1-129)||(36183013-36183139)
chr1 (204-340)||(44490632-44490768)
chr1 (1-71)||(12067764-12067834)
chr1 (251-344)||(43514353-43514446)
chr1 (278-360)||(25901395-25901477)
chr1 (279-347)||(25901349-25901417)
chr1 (295-354)||(16315368-16315427)
chr1 (249-360)||(23943606-23943717)
chr1 (265-354)||(9355411-9355500)
chr1 (295-339)||(12063433-12063477)
chr1 (214-294)||(28539501-28539581)
chr1 (1-66)||(33401742-33401807)
chr1 (1-66)||(33618160-33618225)
chr1 (276-360)||(49599818-49599902)
chr1 (252-294)||(28485879-28485921)
chr1 (221-291)||(33685617-33685687)
chr1 (316-361)||(4199102-4199147)
chr1 (215-292)||(40552734-40552811)
chr1 (14-66)||(35563828-35563880)
chr1 (316-360)||(39222590-39222634)
chr1 (276-360)||(48569390-48569474)
[»] chr2 (15 HSPs)
chr2 (1-360)||(19379981-19380332)
chr2 (204-360)||(28036530-28036686)
chr2 (245-360)||(5848088-5848203)
chr2 (1-131)||(9826840-9826969)
chr2 (243-353)||(11816076-11816186)
chr2 (279-359)||(38807245-38807325)
chr2 (204-299)||(187215-187310)
chr2 (215-304)||(31116216-31116305)
chr2 (214-294)||(6401763-6401843)
chr2 (161-210)||(9826788-9826837)
chr2 (1-66)||(8273581-8273646)
chr2 (311-360)||(29132785-29132834)
chr2 (279-360)||(9826694-9826775)
chr2 (1-53)||(22728103-22728155)
chr2 (221-297)||(34618985-34619061)
[»] chr5 (19 HSPs)
chr5 (1-361)||(20882899-20883259)
chr5 (1-240)||(35048836-35049075)
chr5 (214-360)||(12143809-12143955)
chr5 (236-360)||(29195198-29195322)
chr5 (204-360)||(2743810-2743966)
chr5 (240-360)||(35048689-35048808)
chr5 (197-352)||(13274978-13275133)
chr5 (1-131)||(32911143-32911273)
chr5 (245-299)||(40018105-40018159)
chr5 (212-299)||(21102226-21102313)
chr5 (1-59)||(5506363-5506421)
chr5 (154-264)||(32911265-32911375)
chr5 (221-299)||(34954870-34954948)
chr5 (295-360)||(20887908-20887973)
chr5 (1-66)||(34016306-34016371)
chr5 (15-53)||(28678244-28678282)
chr5 (268-305)||(26092522-26092559)
chr5 (302-354)||(29196075-29196127)
chr5 (320-360)||(41758829-41758869)
[»] chr4 (40 HSPs)
chr4 (1-339)||(156058-156396)
chr4 (1-360)||(1939127-1939478)
chr4 (1-240)||(50334126-50334365)
chr4 (1-360)||(18486845-18487208)
chr4 (1-337)||(41420395-41420719)
chr4 (217-360)||(22923288-22923431)
chr4 (217-360)||(22927941-22928084)
chr4 (217-360)||(22984220-22984363)
chr4 (217-360)||(22997808-22997951)
chr4 (236-360)||(12657182-12657308)
chr4 (217-360)||(32304840-32304983)
chr4 (245-360)||(54185605-54185720)
chr4 (270-360)||(50333980-50334070)
chr4 (245-360)||(45864949-45865064)
chr4 (204-294)||(21283799-21283889)
chr4 (204-299)||(39466256-39466351)
chr4 (214-360)||(48576667-48576812)
chr4 (249-300)||(11661045-11661096)
chr4 (214-254)||(50334070-50334110)
chr4 (249-300)||(11660818-11660869)
chr4 (280-359)||(43502404-43502483)
chr4 (245-360)||(49285493-49285608)
chr4 (295-341)||(50336433-50336479)
chr4 (221-299)||(52790377-52790455)
chr4 (276-361)||(31825844-31825929)
chr4 (235-294)||(39834081-39834140)
chr4 (281-360)||(45864407-45864486)
chr4 (221-299)||(36554495-36554573)
chr4 (295-365)||(43210231-43210301)
chr4 (276-354)||(49063146-49063224)
chr4 (221-299)||(51243771-51243849)
chr4 (268-305)||(32303856-32303893)
chr4 (250-299)||(42040452-42040501)
chr4 (1-66)||(55527580-55527645)
chr4 (302-354)||(5534324-5534376)
chr4 (302-354)||(12656354-12656406)
chr4 (288-360)||(21713292-21713364)
chr4 (316-360)||(38131326-38131370)
chr4 (219-299)||(41099109-41099189)
chr4 (235-299)||(42704400-42704464)
[»] chr8 (22 HSPs)
chr8 (1-341)||(5015385-5015725)
chr8 (1-360)||(5076026-5076372)
chr8 (301-495)||(9459620-9459815)
chr8 (214-360)||(4412597-4412743)
chr8 (219-360)||(39047259-39047400)
chr8 (1-183)||(22675669-22675851)
chr8 (282-359)||(37226988-37227065)
chr8 (216-317)||(41601562-41601663)
chr8 (1-268)||(32076863-32077115)
chr8 (215-360)||(14097511-14097656)
chr8 (1-69)||(41601385-41601453)
chr8 (133-176)||(41601453-41601496)
chr8 (204-303)||(22675839-22675938)
chr8 (304-354)||(41600959-41601009)
chr8 (187-240)||(41601491-41601544)
chr8 (1-53)||(34279260-34279312)
chr8 (216-291)||(5943709-5943784)
chr8 (302-361)||(23542884-23542943)
chr8 (221-299)||(15738751-15738829)
chr8 (276-330)||(36933396-36933450)
chr8 (249-294)||(3194578-3194623)
chr8 (316-360)||(43693720-43693764)
[»] chr6 (13 HSPs)
chr6 (1-240)||(1031494-1031733)
chr6 (1-262)||(23236259-23236513)
chr6 (214-354)||(1031749-1031889)
chr6 (214-360)||(35018706-35018852)
chr6 (215-360)||(7527033-7527178)
chr6 (204-294)||(9929595-9929685)
chr6 (251-294)||(7919335-7919378)
chr6 (276-354)||(800321-800399)
chr6 (237-331)||(4361973-4362067)
chr6 (247-294)||(4410235-4410282)
chr6 (249-291)||(32879621-32879663)
chr6 (1-66)||(4319429-4319494)
chr6 (10-66)||(31483983-31484039)
[»] chr7 (17 HSPs)
chr7 (1-240)||(44226232-44226471)
chr7 (1-363)||(23943480-23943842)
chr7 (214-360)||(44226487-44226633)
chr7 (249-359)||(432933-433043)
chr7 (204-339)||(38458304-38458439)
chr7 (249-291)||(31877428-31877470)
chr7 (235-299)||(46273487-46273551)
chr7 (224-360)||(47441554-47441690)
chr7 (110-188)||(24504022-24504099)
chr7 (249-305)||(30665644-30665700)
chr7 (251-299)||(36653273-36653321)
chr7 (221-295)||(37451030-37451104)
chr7 (221-299)||(40143887-40143965)
chr7 (1-66)||(19363856-19363921)
chr7 (1-66)||(38386520-38386585)
chr7 (1-53)||(4839-4891)
chr7 (245-341)||(23245936-23246032)
[»] chr3 (25 HSPs)
chr3 (1-178)||(53772050-53772227)
chr3 (1-183)||(20513592-20513774)
chr3 (1-242)||(54336526-54336768)
chr3 (240-360)||(34436978-34437098)
chr3 (221-339)||(53772274-53772392)
chr3 (249-360)||(46182937-46183048)
chr3 (245-360)||(46637055-46637170)
chr3 (204-305)||(20513503-20513604)
chr3 (204-284)||(29522953-29523033)
chr3 (277-360)||(29522171-29522253)
chr3 (298-360)||(30934058-30934119)
chr3 (221-366)||(41650894-41651039)
chr3 (245-299)||(30842112-30842166)
chr3 (249-294)||(7789945-7789990)
chr3 (1-66)||(15041027-15041092)
chr3 (1-66)||(19871808-19871873)
chr3 (1-66)||(34084428-34084493)
chr3 (250-299)||(51170984-51171033)
chr3 (249-294)||(51815138-51815183)
chr3 (251-299)||(53630307-53630355)
chr3 (14-53)||(7666040-7666079)
chr3 (204-294)||(6778619-6778709)
chr3 (252-294)||(25226806-25226848)
chr3 (286-360)||(39417919-39417993)
chr3 (1-54)||(35068964-35069017)
[»] scaffold0015 (2 HSPs)
scaffold0015 (164-294)||(33506-33636)
scaffold0015 (1-52)||(33375-33426)
[»] scaffold0012 (1 HSPs)
scaffold0012 (249-353)||(36266-36370)
[»] scaffold0007 (1 HSPs)
scaffold0007 (216-360)||(256391-256535)
[»] scaffold0408 (1 HSPs)
scaffold0408 (215-360)||(7854-7999)
[»] scaffold0010 (1 HSPs)
scaffold0010 (249-299)||(28599-28649)
[»] scaffold0001 (1 HSPs)
scaffold0001 (245-299)||(185436-185490)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 1181262 - 1181607
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||| |||||||||||||||||||| |||||||    
T  1181262 tttgtgtaattttgatcgattgtgtcgtattatccaataatcttattaaactggcgtaagtcggttcaattacgagcatcttaaggttacggatctttga 1181361  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  1181362 taacacatattgcattcaatgcatatcagtacaacatttattgttgtactgatatatcagtagagcgagagttaactcgcgcaagtgttaacactatgcg 1181461  T
Q  201 tgggttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaa 300  Q
    || ||||||| | ||||||||||||||||||||||              |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1181462 tgagttaactcacgcagtgttttacacttgcgcaa--------------cgttagttaactaacgcatagtttttcacttgcgttagttaactagcgcaa 1181547  T
Q  301 aggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
     |||||||||| || | |||||||||||||||||||||||||||||| |||||| |||||    
T  1181548 gggtaaatttgaaaagactgtaggacgcgagcaaaatgtgctgggtggagagcagaattc 1181607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 30703353 - 30703114
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||| |||||||||||||||||| |||||||||    
T  30703353 tttgtgtaattttgatcgattgtgtcgtattatccaataatcttgttaaaatggcgtaagtcggttcaattacgagcatcttaaggttacaggtctttga 30703254  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtg 200  Q
    | ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  30703253 tgacacatattgcattcaatgcatatcagtacaacatttattgttgtacttatatatcagtagagcatgagttaactcgcgcaagtgttaacactatgcg 30703154  T
Q  201 tgggttaacttatgcagtgttttacacttgcgcaacttaa 240  Q
    || ||||||| | |||||||||||||||||||||||||||    
T  30703153 tgagttaactcacgcagtgttttacacttgcgcaacttaa 30703114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 106 - 360
Target Start/End: Complemental strand, 16314141 - 16313901
Alignment:
Q  106 catattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtgtgggt 205  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | | ||    
T  16314141 catattgcattcaaagcatatcagtacaacatttattgttgtactgatatattagtagagcgtgagttaactcgcgcaagtgttaacactatgcgggagt 16314042  T
Q  206 taacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggta 305  Q
    ||| | |  ||||||||||||||||||||              ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  16314041 taagtcacacagtgttttacacttgcgca--------------gcgttagttaactaacgcatagtttttcacttgcgttagttaactagcgcaagggta 16313956  T
Q  306 aatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    |||||| |||||||| | |||||||||||||||||||||||| |||||| |||||    
T  16313955 aatttgaaacggctgcatgacgcgagcaaaatgtgctgggtggagagcataattc 16313901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 103 - 360
Target Start/End: Original strand, 12067843 - 12068092
Alignment:
Q  103 acacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtgtg 202  Q
    |||||||||| |||||||||||||||||| |        || |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  12067843 acacatattggattcaatgcatatcagtaaa--------tgttgtactgatatatcagtagagcgtgagttaactcgcgcaaatgttaacactatgcgtg 12067934  T
Q  203 ggttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaag 302  Q
     ||||||| |  |||||||||||||||| |||||||||||||||||||||||||||||||  | |||  ||| ||||| ||||||||||||| ||||| |    
T  12067935 agttaactcacacagtgttttacacttgtgcaacttaacttgcgcagcgttagttaactactgtatacatttacactttcgttagttaactaacgcaagg 12068034  T
Q  303 gtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
     ||||||||||||||||| ||| |||||||||||||||||||||| |||||| |||||    
T  12068035 ataaatttggaacggctgcagggcgcgagcaaaatgtgctgggtggagagcataattc 12068092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 214 - 360
Target Start/End: Original strand, 7014952 - 7015098
Alignment:
Q  214 gcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttgga 313  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| ||    
T  7014952 gcagtgttttacacttgcgcatcttaacttgcgcagcgttagttaactaacgcgtagtttttcacttgcgttagttaactagcgcaagggtaaatttcga 7015051  T
Q  314 acggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    ||||||| ||| |||||||||||||||||||||| |||||| |||||    
T  7015052 acggctgcagggcgcgagcaaaatgtgctgggtggagagcagaattc 7015098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 23943419 - 23943618
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| || |   ||| || |||||||| ||||||||||||||||||||            
T  23943419 tttgtgtaattttgatcgattgtgtcgtattatccaataatcttgttatacaggaataattcagttcaattacgagcatcttaaggttacgg-------- 23943510  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtg 200  Q
      |||||  |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||| |    
T  23943511 --acacaatttgcattcaatgcatatcagtacaacatttattgttgtactgatatataagtagagtgtgagttaaatcgcgcatgtgttaacactatgcg 23943608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 214 - 360
Target Start/End: Complemental strand, 30703098 - 30702952
Alignment:
Q  214 gcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttgga 313  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||  || || ||||||||||||    
T  30703098 gcagtgttttacacttgcgcatcttaacttgcgcaacgttagttaactaacacataatttttcagttgcgttagttaactcacggaagggtaaatttgga 30702999  T
Q  314 acggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    ||||||  | ||| ||||||||||||| ||| || |||||| |||||    
T  30702998 acggctacatgacacgagcaaaatgtgttggatggagagcagaattc 30702952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 215 - 360
Target Start/End: Original strand, 49000747 - 49000892
Alignment:
Q  215 cagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaa 314  Q
    |||||||||||||||||||   |||| |||||||| |||||||||||| ||||||  ||| ||||||||| |||||||||| |||| ||||||||| |||    
T  49000747 cagtgttttacacttgcgctctttaagttgcgcagtgttagttaactagcgcatacatttacacttgcgtgagttaactagtgcaagggtaaatttagaa 49000846  T
Q  315 cggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    |||||  ||| |||||||||||||||||||||| ||||||||||||    
T  49000847 cggctacagggcgcgagcaaaatgtgctgggtgaagagcaaaattc 49000892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 165 - 360
Target Start/End: Complemental strand, 33296619 - 33296425
Alignment:
Q  165 gcgtgagttaactcgcgcaagtgttaacactatgtgtgggttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaac 264  Q
    |||||||||||||| |||| |||||||   | || ||| ||||||| | ||||| ||| |||||||||||| |||| |  |||| ||||||||||||| |    
T  33296619 gcgtgagttaactcacgcatgtgttaatg-tctgcgtgagttaactaacgcagtttttaacacttgcgcaagttaattgacgcaacgttagttaactagc 33296521  T
Q  265 gcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    |||||  ||| ||||||||| ||||||||| ||||| |||||||||||||| | |||||| ||||||||||||||||||| || |||||| |||||    
T  33296520 gcatacatttacacttgcgtgagttaactaacgcaagggtaaatttggaacagatgtagggcgcgagcaaaatgtgctggatgaagagcagaattc 33296425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 154 - 349
Target Start/End: Complemental strand, 36183019 - 36182824
Alignment:
Q  154 atatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtgtgggttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgtt 253  Q
    ||||||| ||||||||||||||||||| || ||||||||||||||  || ||||||| |||||||||||||||||||| ||||||||    | || ||||    
T  36183019 atatcagcagagcgtgagttaactcgcacatgtgttaacactatgcatgagttaactaatgcagtgttttacacttgcccaacttaatcgacacatcgtt 36182920  T
Q  254 agttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgta 349  Q
    | |||||||  ||||| |||| |||||| |||||||||||| | |||   || |||||||| ||||| ||| ||||||| |||||||| |||||||    
T  36182919 atttaactagtgcatagttttacacttgtgttagttaactaacacaagaatatatttggaaaggctgcagggcgcgagcgaaatgtgcagggtgta 36182824  T

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Target: chr1; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 36183139 - 36183013
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| ||||||||||||||||| |||||||| |||||||||||||||||  |||| ||| ||||||| ||||| |||||||| |||||||||||||    
T  36183139 tttgtgtaattttgatcgattgtgtcatattatccgataatcttgttaaactggcgtaattcgattcaattacgagcgtcttaaggctacgggtctttga 36183040  T
Q  101 taacacatattgcattcaatgcatatcag 129  Q
    | ||||  | |||||||||||||||||||    
T  36183039 tgacac--aatgcattcaatgcatatcag 36183013  T

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Target: chr1; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 204 - 340
Target Start/End: Original strand, 44490632 - 44490768
Alignment:
Q  204 gttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaagg 303  Q
    ||||||| | ||||||||||||||||| ||   |||| |||||||| |||||||||||| ||||||  ||| ||||||||| |||||||||| |||| ||    
T  44490632 gttaactcacgcagtgttttacacttgtgctctttaagttgcgcagtgttagttaactagcgcatacatttacacttgcgtgagttaactagtgcaaggg 44490731  T
Q  304 taaatttggaacggctgtaggacgcgagcaaaatgtg 340  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  44490732 taaatttggaacggctgcagggcgcgagcaaaatgtg 44490768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 12067764 - 12067834
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaatt 71  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  12067764 tttgtgtaattttgatcgattgtgtcgtattatccaataatcttgttaaactggcgtaagtcggttcaatt 12067834  T

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Target: chr1; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 251 - 344
Target Start/End: Complemental strand, 43514446 - 43514353
Alignment:
Q  251 gttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgg 344  Q
    |||| |||||||  ||||| |||| ||||||||||||||||||| ||||| |||||||||  |||||||| |||||||||||||||||||||||    
T  43514446 gttacttaactagtgcatagttttacacttgcgttagttaactaacgcaagggtaaatttaaaacggctgcaggacgcgagcaaaatgtgctgg 43514353  T

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Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 360
Target Start/End: Original strand, 25901395 - 25901477
Alignment:
Q  278 cttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||| |||||| ||||||||||| || |||| |||||| |||||    
T  25901395 cttgcgttagttaactagcgcaaaggtgaatttggtacgactgcaggacgtgagcaaaatgtacttggtggagagcagaattc 25901477  T

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Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 25901417 - 25901349
Alignment:
Q  279 ttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtg 347  Q
    ||||| |||||||||| ||||| ||||||||||| |||||| |||| ||||||||||||||||||||||    
T  25901417 ttgcgctagttaactaacgcaagggtaaatttggtacggctatagggcgcgagcaaaatgtgctgggtg 25901349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 16315368 - 16315427
Alignment:
Q  295 gcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagca 354  Q
    |||||| | ||||||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  16315368 gcgcaaggataaatttggaacggctgtagggcgcgagcaaaatgtgcagggtggagagca 16315427  T

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Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 360
Target Start/End: Original strand, 23943606 - 23943717
Alignment:
Q  249 gcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgt 348  Q
    |||| ||||||||  |||||| |||| || || ||||||||||| | ||||| |||| ||||||||||| || ||| ||| |||||||||||| |||||     
T  23943606 gcgtgagttaactggcgcatagttttacagttacgttagttaacaaacgcaagggtatatttggaacggttgcagggcgcaagcaaaatgtgcagggtga 23943705  T
Q  349 agagcaaaattc 360  Q
    |||||| |||||    
T  23943706 agagcagaattc 23943717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 9355411 - 9355500
Alignment:
Q  265 gcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagca 354  Q
    ||||| |||| ||||||||||||||||||||||||| |||||| ||  ||| |  | ||| |||||||||||||||| ||||| ||||||    
T  9355411 gcatagttttacacttgcgttagttaactagcgcaagggtaaacttaaaacaggcgcagggcgcgagcaaaatgtgcagggtggagagca 9355500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 12063477 - 12063433
Alignment:
Q  295 gcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgt 339  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||    
T  12063477 gcgcataggtaaatttggaacggctgcaggacgcgagcaaaatgt 12063433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 28539581 - 28539501
Alignment:
Q  214 gcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaacta 294  Q
    |||||| ||||||| ||||  |||||| | ||||| ||||||||||||||||||| | ||| |||||||||||||| ||||    
T  28539581 gcagtgctttacacatgcgttacttaagtagcgcaacgttagttaactaacgcattaatttacacttgcgttagtttacta 28539501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33401807 - 33401742
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggtt 66  Q
    |||| ||| ||| |||||||| ||||||||||||| |||||||||||||||||  |||| ||||||    
T  33401807 tttgagtaatttggatcgattatgtcgtattatccgataatcttgttaaactggcgtaattcggtt 33401742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33618225 - 33618160
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggtt 66  Q
    |||| ||| ||| |||||||| ||||||||||||| |||||||||||||||||  |||| ||||||    
T  33618225 tttgagtaatttggatcgattatgtcgtattatccgataatcttgttaaactggcgtaattcggtt 33618160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 360
Target Start/End: Original strand, 49599818 - 49599902
Alignment:
Q  276 cacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    ||||||||  ||||||||||| ||| | ||  ||||| | ||||||||| |||||||||||||||| |||||| ||||| |||||    
T  49599818 cacttgcgcaagttaactagcacaaggatatttttggcatggctgtagggcgcgagcaaaatgtgcagggtgtggagcagaattc 49599902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 28485921 - 28485879
Alignment:
Q  252 ttagttaactaacgcataatttttcacttgcgttagttaacta 294  Q
    |||||||| |||||||||||||| ||||||| |||||||||||    
T  28485921 ttagttaagtaacgcataattttacacttgcattagttaacta 28485879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 33685687 - 33685617
Alignment:
Q  221 tttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaa 291  Q
    ||||||||||||| ||||||| || ||| || || ||||||  ||||||| ||| ||||||||||||||||    
T  33685687 tttacacttgcgccacttaacatgtgcaacgctatttaacttgcgcataagtttacacttgcgttagttaa 33685617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 4199102 - 4199147
Alignment:
Q  316 ggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattcc 361  Q
    ||||| ||| ||||||||||||||| |||||| |||||||||||||    
T  4199102 ggctgcagggcgcgagcaaaatgtgttgggtgaagagcaaaattcc 4199147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 292
Target Start/End: Complemental strand, 40552811 - 40552734
Alignment:
Q  215 cagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaac 292  Q
    ||||||||||||| ||||| | |||| ||||| | ||||||||||||||| ||||  ||| ||||| || ||||||||    
T  40552811 cagtgttttacacatgcgctagttaagttgcgtaacgttagttaactaacacatatatttacacttacgctagttaac 40552734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 35563880 - 35563828
Alignment:
Q  14 gatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggtt 66  Q
    |||||||| ||||||||||||  ||||||| |||||||||| |||| ||||||    
T  35563880 gatcgattatgtcgtattatctgataatctggttaaactgacgtaattcggtt 35563828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 360
Target Start/End: Complemental strand, 39222634 - 39222590
Alignment:
Q  316 ggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    ||||| ||| |||||||||||||||| ||||| ||||||||||||    
T  39222634 ggctgcagggcgcgagcaaaatgtgcagggtgaagagcaaaattc 39222590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 360
Target Start/End: Original strand, 48569390 - 48569474
Alignment:
Q  276 cacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    ||||||||  ||||||||||||||| || |  ||||| | ||| | ||| |||||||||||||||| ||||| |||||| |||||    
T  48569390 cacttgcgcaagttaactagcgcaagggcatttttggcatggcagcagggcgcgagcaaaatgtgcagggtgaagagcagaattc 48569474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 19379981 - 19380332
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||    
T  19379981 tttgtgtaattttgttcgattgtgtcgtattatccaataatcttgttaaactggcgtaagtcggttcaattacgagcatcttaaggttacgggtctttga 19380080  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtg 200  Q
    | |||||||||||||||||||||||| |||| |        || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19380081 tgacacatattgcattcaatgcatattagtaaa--------tgttgtactgatatatcagtagagcgtgagttaacttgcgcaagtgttaacactatgtg 19380172  T
Q  201 tgggttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaa 300  Q
    || ||||||| |  ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||    
T  19380173 tgagttaactcacacagtgttgtacatttgcgcaacttaacttgcgcagcgttagttaactaacgcatacatttacacttgcgttagttaactagcgcaa 19380272  T
Q  301 aggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
      |||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
T  19380273 gagtaaatttggaacggctgcagggcgcgagcaaaatgtgctgggtggagagcaaaattc 19380332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 204 - 360
Target Start/End: Original strand, 28036530 - 28036686
Alignment:
Q  204 gttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaagg 303  Q
    ||||||| | ||||||||||||||||||||   |||| ||||||||| ||||||||||| ||||||  ||| ||||||||| ||||||| ||||||   |    
T  28036530 gttaactcacgcagtgttttacacttgcgctctttaagttgcgcagctttagttaactagcgcatacatttacacttgcgtgagttaaccagcgcatgag 28036629  T
Q  304 taaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    ||||||||||||||||| ||| ||| |||||||| || |||||| |||||| |||||    
T  28036630 taaatttggaacggctgcagggcgcaagcaaaatatgttgggtgaagagcataattc 28036686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 245 - 360
Target Start/End: Original strand, 5848088 - 5848203
Alignment:
Q  245 cgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgg 344  Q
    |||||||||| ||||||| |||||| |||| ||||| ||||||||||||||||||| ||||||||||||| |||||  || |||||||||||||||| ||    
T  5848088 cgcagcgttacttaactagcgcatagttttacacttacgttagttaactagcgcaagggtaaatttggaatggctgctgggcgcgagcaaaatgtgcagg 5848187  T
Q  345 gtgtagagcaaaattc 360  Q
    ||| | |||| |||||    
T  5848188 gtggatagcagaattc 5848203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 9826969 - 9826840
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| |||||||||||||||||||||||||  | ||||||||||||||   |||| ||||||||||| ||||| | ||| |||||||||||||| |    
T  9826969 tttgtgtaattttgatcgattgtgtcgtattatctgacaatcttgttaaactagcgtaattcggttcaattacgagcgt-ttagggttacgggtctttta 9826871  T
Q  101 taacacatattgcattcaatgcatatcagta 131  Q
      |||||  ||||||||||||||||||||||    
T  9826870 cgacacaatttgcattcaatgcatatcagta 9826840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 353
Target Start/End: Original strand, 11816076 - 11816186
Alignment:
Q  243 tgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgct 342  Q
    |||||| |||||||||||||  ||||| |||| ||||||||| ||||||||||||||| |||||||||| |||||||| |||   ||||||||||||| |    
T  11816076 tgcgcaacgttagttaactagtgcatagttttacacttgcgtgagttaactagcgcaagggtaaatttgaaacggctgcagggtacgagcaaaatgtgat 11816175  T
Q  343 gggtgtagagc 353  Q
    ||||| |||||    
T  11816176 gggtgaagagc 11816186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 359
Target Start/End: Original strand, 38807245 - 38807325
Alignment:
Q  279 ttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaatt 359  Q
    |||||||| |||||||| |||| ||||||||||||||||||||||| || ||| ||||||||| ||||| |||||| ||||    
T  38807245 ttgcgttatttaactagtgcaagggtaaatttggaacggctgtagggcgtgagtaaaatgtgcagggtggagagcataatt 38807325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 204 - 299
Target Start/End: Original strand, 187215 - 187310
Alignment:
Q  204 gttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgca 299  Q
    ||||||| |||||||||||||||| |||   |||||| |  || |||||| ||||||||||||||| |||| ||||||||||||||||||| ||||    
T  187215 gttaactcatgcagtgttttacacatgcattacttaagtaacgtagcgtttgttaactaacgcatagttttacacttgcgttagttaactaacgca 187310  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 304
Target Start/End: Complemental strand, 31116305 - 31116216
Alignment:
Q  215 cagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggt 304  Q
    |||||||||| |||||||  |||||| |  |||| ||||||||||||||| ||||| ||| ||||||||||||||||||| |||| ||||    
T  31116305 cagtgttttatacttgcgttacttaagtgacgcaacgttagttaactaacacataaatttacacttgcgttagttaactaacgcagaggt 31116216  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 6401843 - 6401763
Alignment:
Q  214 gcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaacta 294  Q
    |||| ||||||||||||||  |||||| |  ||| |||||||||||||||| |||||||||  ||||||||||||||||||    
T  6401843 gcagagttttacacttgcgttacttaagtcacgctgcgttagttaactaacacataattttatacttgcgttagttaacta 6401763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 9826837 - 9826788
Alignment:
Q  161 tagagcgtgagttaactcgcgcaagtgttaacactatgtgtgggttaact 210  Q
    ||||||| ||||||||||||||| |||||||||||||||||| |||||||    
T  9826837 tagagcgcgagttaactcgcgcatgtgttaacactatgtgtgagttaact 9826788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 8273646 - 8273581
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggtt 66  Q
    |||| ||| ||| |||||||| ||||||||||||| |||||||||||||||||  |||| ||||||    
T  8273646 tttgagtaatttggatcgattatgtcgtattatccgataatcttgttaaactggcgtaattcggtt 8273581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 29132785 - 29132834
Alignment:
Q  311 ggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    |||| ||||| ||||||||||| |||||||||||||| ||||||||||||    
T  29132785 ggaatggctgcaggacgcgagcgaaatgtgctgggtgaagagcaaaattc 29132834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 360
Target Start/End: Complemental strand, 9826775 - 9826694
Alignment:
Q  279 ttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    |||||||||||||||| |||||  ||| |||||||| ||||| ||| || |||| |||||||| || || |||||| |||||    
T  9826775 ttgcgttagttaactaacgcaagtgtatatttggaagggctgcagggcgtgagcgaaatgtgcaggatgaagagcagaattc 9826694  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 22728155 - 22728103
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactg 53  Q
    |||||||| ||| |||||||| ||||||||||||  ||||| |||||||||||    
T  22728155 tttgtgtaatttggatcgattatgtcgtattatctgataatgttgttaaactg 22728103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 34619061 - 34618985
Alignment:
Q  221 tttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcg 297  Q
    ||||||||||||| ||||||| |||||| || || ||||||  ||||||| ||| |||||||  || ||||||||||    
T  34619061 tttacacttgcgctacttaacatgcgcaacgctacttaacttgcgcataagtttacacttgcactaattaactagcg 34618985  T

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Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 20883259 - 20882899
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||  |||| ||||||||||| | |||||||||| |||||||||||||||    
T  20883259 tttgtgtaattttgatcaattgtgtcgtattatccaataatcttgttaaactggcgtaaatcggttcaattacaagcatcttaaagttacgggtctttga 20883160  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtg 200  Q
    | |||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||      
T  20883159 tgacacatattgtattcaatgcatatcggtacaacatttattgatgtactaatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgcc 20883060  T
Q  201 tgggttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaa 300  Q
    || ||||||| |  || ||||||||||||||||| ||||||||||||| || |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  20883059 tgagttaactcacacaatgttttacacttgcgcatcttaacttgcgcaacgctagttaactaacacatagtttttcacttgcgttagttaactagcgcaa 20882960  T
Q  301 aggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattcc 361  Q
     ||||||||||||||||||| | | || |||||||||  |||||||| |||||||||||||    
T  20882959 gggtaaatttggaacggctgcatggcgtgagcaaaatacgctgggtggagagcaaaattcc 20882899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 35049075 - 35048836
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||  |||| ||||||||||| ||||||||||||||||||||||||||||    
T  35049075 tttgtgtaattttgatcgattgtgtcgtattatccaataatcttgttaagctggcgtaaatcggttcaattacgagcatcttaaggttacgggtctttga 35048976  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtg 200  Q
    | ||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||| ||||||||||||||||||||| |||||||||||||||| |    
T  35048975 tgacacatattgcattcaatgcatatcagtataacatttattgatgtactaatatatcaatagagcgtgagttaactcgcgtaagtgttaacactatgcg 35048876  T
Q  201 tgggttaacttatgcagtgttttacacttgcgcaacttaa 240  Q
     | ||||||| | |||||||||||||||||||||||||||    
T  35048875 ggagttaactcacgcagtgttttacacttgcgcaacttaa 35048836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 214 - 360
Target Start/End: Complemental strand, 12143955 - 12143809
Alignment:
Q  214 gcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttgga 313  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||    
T  12143955 gcagtgttttacacttgcgcatcttaacttgcgcaacgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaaaggtaaatttaga 12143856  T
Q  314 acggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    ||||||| ||| ||||||||||||||||| |||| |||||| |||||    
T  12143855 acggctgcagggcgcgagcaaaatgtgctaggtggagagcagaattc 12143809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 236 - 360
Target Start/End: Complemental strand, 29195322 - 29195198
Alignment:
Q  236 cttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaa 335  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| | |||  |||||||||    
T  29195322 cttaacttgtgcagcgttagttaactaacgcatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggccgcagggagcgagcaaa 29195223  T
Q  336 atgtgctgggtgtagagcaaaattc 360  Q
    || ||||||||| |||||| |||||    
T  29195222 atatgctgggtggagagcagaattc 29195198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 204 - 360
Target Start/End: Original strand, 2743810 - 2743966
Alignment:
Q  204 gttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaagg 303  Q
    ||||||| | ||||||||||||||||||||   |||| ||||||||||||||||||||| ||||||  ||| ||||| ||| ||||||||||||||| |     
T  2743810 gttaactcacgcagtgttttacacttgcgctctttaagttgcgcagcgttagttaactagcgcatacatttacacttacgtgagttaactagcgcaagga 2743909  T
Q  304 taaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    ||||||||||||||||| | | | |||||||||||||||||||| |||||| |||||    
T  2743910 taaatttggaacggctgcaaggcacgagcaaaatgtgctgggtgaagagcagaattc 2743966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 240 - 360
Target Start/End: Complemental strand, 35048808 - 35048689
Alignment:
Q  240 acttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgt 339  Q
    |||||||||||||||||||||||||||||  |||||||||||||||| ||||||| ||||| |||||||||| |||||||| |||  |||||||||||||    
T  35048808 acttgcgcagcgttagttaactaacgcatg-tttttcacttgcgttaattaactaacgcaagggtaaatttgaaacggctgcagggagcgagcaaaatgt 35048710  T
Q  340 gctgggtgtagagcaaaattc 360  Q
    |||||||| |||||| |||||    
T  35048709 gctgggtggagagcagaattc 35048689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 197 - 352
Target Start/End: Original strand, 13274978 - 13275133
Alignment:
Q  197 tgtgtgggttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagc 296  Q
    |||||| ||||||| | ||||||||||||||||||||   |||| ||||||| ||||||||||||| | ||||  ||| ||||||||| |||||||||||    
T  13274978 tgtgtgagttaactcacgcagtgttttacacttgcgctctttaaattgcgcaacgttagttaactagcacatacatttacacttgcgtgagttaactagc 13275077  T
Q  297 gcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagag 352  Q
    |||| ||||||||| |||||| || ||| |||||||||||||||| ||||| ||||    
T  13275078 gcaatggtaaattttgaacggttgcagggcgcgagcaaaatgtgcggggtgaagag 13275133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 32911143 - 32911273
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||  |||| |||||   |||   ||| | | ||| ||||||||| || |    
T  32911143 tttgtgtaattttgatcgattgtgtcgtattatccgataatcttgttaaactggtgtaattcggtctgattattagcgtgtaaagattacgggtcattaa 32911242  T
Q  101 taacacatattgcattcaatgcatatcagta 131  Q
    | ||| |  ||||||||||||||||||||||    
T  32911243 tgacatactttgcattcaatgcatatcagta 32911273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 40018159 - 40018105
Alignment:
Q  245 cgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgca 299  Q
    |||||| |||||||||||||||||| |||| ||||||||||||||||||| ||||    
T  40018159 cgcagcattagttaactaacgcatagttttacacttgcgttagttaactaacgca 40018105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 299
Target Start/End: Original strand, 21102226 - 21102313
Alignment:
Q  212 atgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgca 299  Q
    ||||||||||  |||||||||| | |||| |||||  | |||||||||||| ||||||| ||  ||||||||||||||||||| ||||    
T  21102226 atgcagtgttagacacttgcgctatttaagttgcgttgtgttagttaactatcgcataaattcgcacttgcgttagttaactaacgca 21102313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 5506363 - 5506421
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaa 59  Q
    |||| ||| ||| |||||||| ||||||||||||| |||||||||||||||||| ||||    
T  5506363 tttgagtaatttggatcgattatgtcgtattatccgataatcttgttaaactgacgtaa 5506421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 264
Target Start/End: Original strand, 32911265 - 32911375
Alignment:
Q  154 atatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtgtgggttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgtt 253  Q
    ||||||||| ||||||||||||||  |||  ||||||||||| |  ||| ||||||| | |||||||||||||| |||||  ||||| |  ||  |||||    
T  32911265 atatcagtatagcgtgagttaacttacgcttgtgttaacactttaagtgagttaactcacgcagtgttttacacatgcgcgtcttaagtgacgatgcgtt 32911364  T
Q  254 agttaactaac 264  Q
    |||||||||||    
T  32911365 agttaactaac 32911375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 299
Target Start/End: Original strand, 34954870 - 34954948
Alignment:
Q  221 tttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgca 299  Q
    ||||||||||||| ||||||| ||||| ||| || ||||||  |||| || ||| |||||||| |||||||||||||||    
T  34954870 tttacacttgcgccacttaacatgcgccgcgctatttaacttgcgcacaagtttacacttgcggtagttaactagcgca 34954948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 295 - 360
Target Start/End: Original strand, 20887908 - 20887973
Alignment:
Q  295 gcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    |||||| ||||||||| ||||||||| ||  |||||||||||||||| ||||| |||||| |||||    
T  20887908 gcgcaagggtaaatttcgaacggctgcagagcgcgagcaaaatgtgcagggtggagagcagaattc 20887973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 34016371 - 34016306
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggtt 66  Q
    |||| ||| ||| |||||||| ||||||||||||| |||||||||||||||||  |||| ||||||    
T  34016371 tttgagtaatttggatcgattatgtcgtattatccgataatcttgttaaactggcgtaattcggtt 34016306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 28678282 - 28678244
Alignment:
Q  15 atcgattgtgtcgtattatccaataatcttgttaaactg 53  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  28678282 atcgattatgtcgtattatccgataatcttgttaaactg 28678244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 26092559 - 26092522
Alignment:
Q  268 taatttttcacttgcgttagttaactagcgcaaaggta 305  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  26092559 taattttacacttgcgttagttaactagcgcaagggta 26092522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 29196075 - 29196127
Alignment:
Q  302 ggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagca 354  Q
    |||||||||||||| |||| | | |||||||||||||||| ||||| ||||||    
T  29196075 ggtaaatttggaactgctgcatggcgcgagcaaaatgtgcagggtggagagca 29196127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 41758829 - 41758869
Alignment:
Q  320 gtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    ||||| |||||||||||||||||||||| ||||||| ||||    
T  41758829 gtagggcgcgagcaaaatgtgctgggtgaagagcaacattc 41758869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 156396 - 156058
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||  |||| ||||||||||| |||||||||||||||||||| |||||||    
T  156396 tttgtgtaattttgattgattgtgtcgtattatccaataatcttgttaaactggcgtaattcggttcaattacgagcatcttaaggttacggttctttga 156297  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtg 200  Q
    | |||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  156296 tgacacaatttgcattcaatgcatatcagtacaacatttattgttgtactgatatatcagtagagcgtgagttaactcgcgcatgtgttaacactatgcg 156197  T
Q  201 tgggttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaa 300  Q
    || ||||||| | ||||||||| ||||||||||||| ||| |  |||||||||| ||||||| | ||||||||| ||||||||||||||||||| || ||    
T  156196 tgagttaactaacgcagtgtttaacacttgcgcaacataattgacgcagcgttaattaactagcacataattttacacttgcgttagttaactaacgtaa 156097  T
Q  301 aggtaaatttggaacggctgtaggacgcgagcaaaatgt 339  Q
     | || |||||||| ||||| ||| ||||||||||||||    
T  156096 ggatatatttggaatggctgcagggcgcgagcaaaatgt 156058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 1939127 - 1939478
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||| ||||||||||||||||||   |||||||    
T  1939127 tttgtgtaattttgatcgattgtgtcgtattatccaataatcttgttaaaatggcgtaagtcggttcaattacgagcatcttaaggttacaaatctttga 1939226  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtg 200  Q
    | || |||||||||||||||||||||||||| |        || |||||||||||| |||||||||||||||||||||| ||||||| |||||||||| |    
T  1939227 tgacgcatattgcattcaatgcatatcagtaaa--------tgttgtactgatataccagtagagcgtgagttaactcgggcaagtgataacactatgcg 1939318  T
Q  201 tgggttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaa 300  Q
    || |||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||| |||||   ||| |||||||||||||||||||||| ||    
T  1939319 tgagttaacttacacagtgttttacacttgcgcaacttaacttgtgcagcgttagttaactagcgcatgcatttacacttgcgttagttaactagcgtaa 1939418  T
Q  301 aggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
     | ||||||||||||||||| ||| |||||||||||||||||||||  |||||| |||||    
T  1939419 ggataaatttggaacggctgcagggcgcgagcaaaatgtgctgggtagagagcagaattc 1939478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 50334365 - 50334126
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| |||| ||||||||||||||||||||||| |||||||||||||||  |||||||||||||||| |||||||||||||||||| |||||||||    
T  50334365 tttgtgtaattttcatcgattgtgtcgtattatccaacaatcttgttaaactggagtaagtcggttcaattacgagcatcttaaggttacaggtctttga 50334266  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtg 200  Q
    | |||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  50334265 tgacacatattgcattcaatgcatatcattacaacatttattgatgtattgatatatcagtagagcgtgagttaactcgcacaagtgttaacactatgcg 50334166  T
Q  201 tgggttaacttatgcagtgttttacacttgcgcaacttaa 240  Q
    || ||||||  | |||||||||||||||||||||||||||    
T  50334165 tgagttaacccacgcagtgttttacacttgcgcaacttaa 50334126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 18486845 - 18487208
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| ||||||| ||||||||| |||||| | |||||||||||||||||  |||| ||||||||||| ||||  ||||||||||||||||||||||    
T  18486845 tttgtgtaattttgattgattgtgtcatattattcgataatcttgttaaactggcgtaattcggttcaattacgagggtcttaaggttacgggtctttga 18486944  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcag----tagagcgtgagttaactcgcgcaagtgttaacacta 196  Q
      |||||  |||||||||||||||||||||||| |||||| || ||||||||||||||||    ||||||||||||||||||| ||| ||||||||||||    
T  18486945 cgacacaatttgcattcaatgcatatcagtacatcatttaatgttgtactgatatatcagtagatagagcgtgagttaactcgtgcatgtgttaacacta 18487044  T
Q  197 tgtgtgggttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagc 296  Q
    || ||| ||||||| | ||||| ||||||||||||||||||||| | ||||  |||| | ||||||  ||||| |||| ||||||||||||||||||| |    
T  18487045 tgcgtgagttaactaacgcagtattttacacttgcgcaacttaattagcgcgacgttggctaactagtgcatagttttacacttgcgttagttaactaac 18487144  T
Q  297 gcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    |||| |||| |||||||| ||||  |||  | ||||||||||||| ||||  |||||| |||||    
T  18487145 gcaagggtatatttggaagggctacagggtgtgagcaaaatgtgcagggtaaagagcagaattc 18487208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 41420395 - 41420719
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| || |  |||| || |||||||| |||||||||||||||||| |            
T  41420395 tttgtgtaattttgatcgattgtgtcgtattatccaataatcttgttatacaggcgtaattcagttcaattacgagcatcttaaggttacag-------- 41420486  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtg 200  Q
      |||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||  ||| |    
T  41420487 --acacaatttgcattcaatgcatatcagtacaacatttattgttgtactgatatatcagtagagcgtgagttaacacgcgcatgtgttaacatgatgcg 41420584  T
Q  201 tgggttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaa 300  Q
    || ||||||| |  ||||||||||||||| | ||| |||| |  || ||||||||||||||| |||||| ||||  || ||||||| |||||||||||||    
T  41420585 tgagttaactcacacagtgttttacacttacacaagttaagtgacgtagcgttagttaactagcgcatagtttt--acatgcgttacttaactagcgcaa 41420682  T
Q  301 aggtaaatttggaacggctgtaggacgcgagcaaaat 337  Q
      |||||||||||||||||| | | ||||| ||||||    
T  41420683 gagtaaatttggaacggctgcatggcgcgaacaaaat 41420719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 217 - 360
Target Start/End: Original strand, 22923288 - 22923431
Alignment:
Q  217 gtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacg 316  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  22923288 gtgttttacacttgcgcatcttaacttgcgcaacgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacg 22923387  T
Q  317 gctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    |||| | | |||||||||||||||||||||| ||||||||||||    
T  22923388 gctgcaaggcgcgagcaaaatgtgctgggtggagagcaaaattc 22923431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 217 - 360
Target Start/End: Original strand, 22927941 - 22928084
Alignment:
Q  217 gtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacg 316  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  22927941 gtgttttacacttgcgcatcttaacttgcgcaacgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacg 22928040  T
Q  317 gctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    |||| | | |||||||||||||||||||||| ||||||||||||    
T  22928041 gctgcaaggcgcgagcaaaatgtgctgggtggagagcaaaattc 22928084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 217 - 360
Target Start/End: Original strand, 22984220 - 22984363
Alignment:
Q  217 gtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacg 316  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  22984220 gtgttttacacttgcgcatcttaacttgcgcaacgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacg 22984319  T
Q  317 gctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    |||| | | |||||||||||||||||||||| ||||||||||||    
T  22984320 gctgcaaggcgcgagcaaaatgtgctgggtggagagcaaaattc 22984363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 217 - 360
Target Start/End: Original strand, 22997808 - 22997951
Alignment:
Q  217 gtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacg 316  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  22997808 gtgttttacacttgcgcatcttaacttgcgcaacgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacg 22997907  T
Q  317 gctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    |||| | | |||||||||||||||||||||| ||||||||||||    
T  22997908 gctgcaaggcgcgagcaaaatgtgctgggtggagagcaaaattc 22997951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 236 - 360
Target Start/End: Original strand, 12657182 - 12657308
Alignment:
Q  236 cttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtagg--acgcgagca 333  Q
    ||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||| ||||||||||||||||||| |||   ||||||||    
T  12657182 cttaacttgcgaagcgttagttaactaacacatagtttttcacttgtgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgcgagca 12657281  T
Q  334 aaatgtgctgggtgtagagcaaaattc 360  Q
    |||||||||||||| |||||| |||||    
T  12657282 aaatgtgctgggtggagagcagaattc 12657308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 217 - 360
Target Start/End: Complemental strand, 32304983 - 32304840
Alignment:
Q  217 gtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacg 316  Q
    |||||||||||||||||   |||| || |||| ||||||||||||||| |||| |||| ||||||||| ||||||||||||||| ||||||||| |||||    
T  32304983 gtgttttacacttgcgcgctttaagttacgcaacgttagttaactaacacatagttttacacttgcgtgagttaactagcgcaagggtaaatttagaacg 32304884  T
Q  317 gctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    |||| | |||||||||||||||||| ||||| ||| || |||||    
T  32304883 gctgcaagacgcgagcaaaatgtgcagggtgaagaacataattc 32304840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 245 - 360
Target Start/End: Original strand, 54185605 - 54185720
Alignment:
Q  245 cgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgg 344  Q
    |||||||||| ||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||| |||||||| ||| |||||||||||| ||| ||    
T  54185605 cgcagcgttacttaactagcgcatagttttacacttgcgttagttaactagcgcaagggtaaatttgaaacggctgcagggcgcgagcaaaatatgcagg 54185704  T
Q  345 gtgtagagcaaaattc 360  Q
    ||| |||||| |||||    
T  54185705 gtggagagcagaattc 54185720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 270 - 360
Target Start/End: Complemental strand, 50334070 - 50333980
Alignment:
Q  270 atttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  ||||||||||||||| ||||| |||||| |||||    
T  50334070 atttttcacttgcgttagttaactagcgcaagggtaaatttggaacggttgtagggtgcgagcaaaatgtgccgggtggagagcagaattc 50333980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 245 - 360
Target Start/End: Original strand, 45864949 - 45865064
Alignment:
Q  245 cgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgg 344  Q
    |||||||||| |||||||||||||| |||| ||||||| |||||||||||||||||  |||||||| |||||| || ||| |||||||||||||||| ||    
T  45864949 cgcagcgttacttaactaacgcatagttttacacttgcattagttaactagcgcaagagtaaatttagaacggttgcagggcgcgagcaaaatgtgcagg 45865048  T
Q  345 gtgtagagcaaaattc 360  Q
    ||| | |||| |||||    
T  45865049 gtggatagcagaattc 45865064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 204 - 294
Target Start/End: Complemental strand, 21283889 - 21283799
Alignment:
Q  204 gttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaacta 294  Q
    ||||||||| |||||||||||||| ||||  |||||| |  |||||||||||||||||||| |||| |||| |||||||||||||||||||    
T  21283889 gttaacttacgcagtgttttacacatgcgttacttaagtaacgcagcgttagttaactaacacatagttttacacttgcgttagttaacta 21283799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 204 - 299
Target Start/End: Original strand, 39466256 - 39466351
Alignment:
Q  204 gttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgca 299  Q
    ||||||| | |||||| ||||||||||||  |||||| |||| || | ||||||||||||||||||  ||| ||||||||||||||||||| ||||    
T  39466256 gttaactcacgcagtgatttacacttgcgatacttaagttgcacaacattagttaactaacgcatacatttacacttgcgttagttaactaacgca 39466351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 214 - 360
Target Start/End: Complemental strand, 48576812 - 48576667
Alignment:
Q  214 gcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttgga 313  Q
    |||||||||| ||||||||| | |||| || ||||| |||||||||||| ||||||  ||| ||||||||| | ||||||||||||| |  ||||||  |    
T  48576812 gcagtgtttt-cacttgcgctatttaagttacgcagtgttagttaactagcgcatacatttacacttgcgtgaattaactagcgcaaggacaaatttaaa 48576714  T
Q  314 acggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    || | || ||  |||||| |||||| |||||||| ||||||||||||    
T  48576713 acagttgcagagcgcgagtaaaatgcgctgggtgaagagcaaaattc 48576667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 300
Target Start/End: Original strand, 11661045 - 11661096
Alignment:
Q  249 gcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaa 300  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||| |||||    
T  11661045 gcgttagttaagtaacgcataattttacacttgcgttagttaactaacgcaa 11661096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 50334110 - 50334070
Alignment:
Q  214 gcagtgttttacacttgcgcaacttaacttgcgcagcgtta 254  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  50334110 gcagtgttttacacttgcgcatcttaacttgcgcagcgtta 50334070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 300
Target Start/End: Complemental strand, 11660869 - 11660818
Alignment:
Q  249 gcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaa 300  Q
    ||||||||||| |||| ||||||||| ||||||||||||||||||| |||||    
T  11660869 gcgttagttaagtaacacataattttacacttgcgttagttaactaacgcaa 11660818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 359
Target Start/End: Original strand, 43502404 - 43502483
Alignment:
Q  280 tgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaatt 359  Q
    ||||||| |||||| ||||| || || |||| |||||| || ||| ||| ||||||||||||||||||||||||| ||||    
T  43502404 tgcgttacttaactcgcgcagagttatatttagaacggttgcagggcgcaagcaaaatgtgctgggtgtagagcagaatt 43502483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 360
Target Start/End: Complemental strand, 49285608 - 49285493
Alignment:
Q  245 cgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgg 344  Q
    |||| ||||| ||||||| |||||| |||| ||||||| |||||||| ||  |||| |||||||||  |||||||  | | |||||||||||||||| ||    
T  49285608 cgcaacgttacttaactagcgcatagttttacacttgcattagttaattaatgcaagggtaaatttaaaacggctacaagccgcgagcaaaatgtgcagg 49285509  T
Q  345 gtgtagagcaaaattc 360  Q
    ||| | |||| |||||    
T  49285508 gtggaaagcagaattc 49285493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 341
Target Start/End: Original strand, 50336433 - 50336479
Alignment:
Q  295 gcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgc 341  Q
    |||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  50336433 gcgcaagggtaaatttggaacggctgcagggcgcgagcaaaatgtgc 50336479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 299
Target Start/End: Original strand, 52790377 - 52790455
Alignment:
Q  221 tttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgca 299  Q
    ||||||||||||| ||||||| |||||| || || ||||||  |||| || ||| |||||||| |||||||||||||||    
T  52790377 tttacacttgcgccacttaacatgcgcaacgctacttaacttgcgcacaagtttacacttgcgctagttaactagcgca 52790455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 276 - 361
Target Start/End: Original strand, 31825844 - 31825929
Alignment:
Q  276 cacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattcc 361  Q
    ||||||||  ||||||||||||||| || |  ||||| | ||||| ||| |||||||||||||||| ||||| |||||| ||||||    
T  31825844 cacttgcgcaagttaactagcgcaagggcatttttggcatggctgcagggcgcgagcaaaatgtgcagggtgaagagcagaattcc 31825929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 39834140 - 39834081
Alignment:
Q  235 acttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaacta 294  Q
    |||||| || ||| ||||||||||| |||||||||||||| ||||  |||||||||||||    
T  39834140 acttaagttacgctgcgttagttaagtaacgcataattttacactaacgttagttaacta 39834081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 360
Target Start/End: Complemental strand, 45864486 - 45864407
Alignment:
Q  281 gcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    |||| |||||||||||||| || ||  |||| |||||||| || |||||||| ||| |||||||||| |||||| |||||    
T  45864486 gcgtgagttaactagcgcagagatatttttgaaacggctgcagcacgcgagcgaaaagtgctgggtgaagagcataattc 45864407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 299
Target Start/End: Original strand, 36554495 - 36554573
Alignment:
Q  221 tttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgca 299  Q
    ||||||||||||| ||||||| |||||| || || |||| |  ||||||| ||| ||||| || |||||||||||||||    
T  36554495 tttacacttgcgccacttaacatgcgcaacgctacttaatttgcgcataagtttacacttacgctagttaactagcgca 36554573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 43210231 - 43210301
Alignment:
Q  295 gcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattccaaca 365  Q
    |||||| |||||||||| |||||||| ||| |||||||||||| ||| | ||| |||||| ||||| ||||    
T  43210231 gcgcaagggtaaatttgaaacggctgcagggcgcgagcaaaatatgcagtgtggagagcagaattcaaaca 43210301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 354
Target Start/End: Complemental strand, 49063224 - 49063146
Alignment:
Q  276 cacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagca 354  Q
    |||||||| ||||||||| |||||| ||||  ||||| ||||||| |||  ||||||||||||||| || || ||||||    
T  49063224 cacttgcgctagttaacttgcgcaagggtatttttggcacggctgcagggtgcgagcaaaatgtgcaggttgaagagca 49063146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 299
Target Start/End: Original strand, 51243771 - 51243849
Alignment:
Q  221 tttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgca 299  Q
    ||||||||||||| | ||||| |||||| || || ||||||  |||| || ||| |||||||| |||||||||||||||    
T  51243771 tttacacttgcgccatttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgca 51243849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 32303893 - 32303856
Alignment:
Q  268 taatttttcacttgcgttagttaactagcgcaaaggta 305  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  32303893 taattttacacttgcgttagttaactagcgcaatggta 32303856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 42040501 - 42040452
Alignment:
Q  250 cgttagttaactaacgcataatttttcacttgcgttagttaactagcgca 299  Q
    ||||||||||||||| |||| |||| ||| ||||||||||||||| ||||    
T  42040501 cgttagttaactaacacatagttttacacgtgcgttagttaactaacgca 42040452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 55527580 - 55527645
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggtt 66  Q
    |||| ||| ||| |||||||| |||||| ||||||  ||||||||||||||||| |||| ||||||    
T  55527580 tttgagtaatttggatcgattatgtcgtgttatccggtaatcttgttaaactgacgtaattcggtt 55527645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 5534324 - 5534376
Alignment:
Q  302 ggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagca 354  Q
    ||||||||||||||||||| |||  ||||| ||||||||| ||||| ||||||    
T  5534324 ggtaaatttggaacggctgcagggtgcgagtaaaatgtgcagggtggagagca 5534376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 12656406 - 12656354
Alignment:
Q  302 ggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagca 354  Q
    ||||||||| ||||||||| |||  ||||||||||||||| ||||| ||||||    
T  12656406 ggtaaatttagaacggctgcagggtgcgagcaaaatgtgcagggtggagagca 12656354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 360
Target Start/End: Original strand, 21713292 - 21713364
Alignment:
Q  288 ttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    ||||||||||||| || |  ||||| | ||||| ||| |||||||||||||||| ||||| |||||| |||||    
T  21713292 ttaactagcgcaagggcatttttggcatggctgcagggcgcgagcaaaatgtgcagggtgaagagcagaattc 21713364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 360
Target Start/End: Complemental strand, 38131370 - 38131326
Alignment:
Q  316 ggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    ||||| ||| |||||||||||||||||||||| ||||||| ||||    
T  38131370 ggctgcagggcgcgagcaaaatgtgctgggtgaagagcaacattc 38131326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 41099109 - 41099189
Alignment:
Q  219 gttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgca 299  Q
    |||| |||||||||  |||||| || ||  |||||||||||||||| ||  ||||| || |||||||||||||||| ||||    
T  41099109 gtttaacacttgcgtgacttaaattacgttgcgttagttaactaacacactattttacatttgcgttagttaactaacgca 41099189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 42704464 - 42704400
Alignment:
Q  235 acttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgca 299  Q
    |||||| | ||||| ||||||||||||||| ||| | ||| ||||||||||||||| ||| ||||    
T  42704464 acttaagtagcgcaacgttagttaactaacacattaatttacacttgcgttagttagctaacgca 42704400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 193; Significance: 1e-104; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 5015725 - 5015385
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||   ||| |||| |||||| ||||||||||||||||||||||||||||    
T  5015725 tttgcgtaattttgatcgattgtgtcgtattatccaataatcttgttaaactggcataattcggatcaattacgagcatcttaaggttacgggtctttga 5015626  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtg 200  Q
    | |||||  ||||||||||||||||||| |||| ||||||||| |||||||| |||| |||||||||||||||||||||| || ||||||||||||||||    
T  5015625 tgacacaatttgcattcaatgcatatcactacatcatttattgttgtactgacatattagtagagcgtgagttaactcgcacatgtgttaacactatgtg 5015526  T
Q  201 tgggttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaa 300  Q
    || ||||||| | ||||||||| ||||||||||||||||| |  |||||||||||||||||| |||||| |||| ||| ||||||||||||||| |||||    
T  5015525 tgcgttaactaacgcagtgtttaacacttgcgcaacttaattgacgcagcgttagttaactagcgcatagttttacacgtgcgttagttaactaacgcaa 5015426  T
Q  301 aggtaaatttggaacggctgtaggacgcgagcaaaatgtgc 341  Q
     |||| ||||||||| | || ||  ||||||||||||||||    
T  5015425 gggtatatttggaacagttgcagagcgcgagcaaaatgtgc 5015385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 5076026 - 5076372
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| ||||||| |||||||||| |||||||||||||||||||||| ||  |||||||||||||||| ||||||||||||||||||||||||||||    
T  5076026 tttgtgtaattttgattgattgtgtcgcattatccaataatcttgttaaattggcgtaagtcggttcaattacgagcatcttaaggttacgggtctttga 5076125  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtg 200  Q
    | ||| ||||||||||||||||||             | | || ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  5076126 tgacaaatattgcattcaatgcat-------------tcaatgttgtactgatatatcagtagagcgtgagttaactcgcgcaggtgttaacactatgcg 5076212  T
Q  201 tgggttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaa 300  Q
    || ||||||| | ||||||||||||||||||||||||||| |  ||||| |||||||||||| |||||| |||| || |||||||||||||||| |||||    
T  5076213 tgagttaactcacgcagtgttttacacttgcgcaacttaattgacgcagtgttagttaactagcgcatagttttacatttgcgttagttaactaacgcaa 5076312  T
Q  301 aggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
     |||||||||| |||||||| | | ||||||||| |||||| ||||| |||||| |||||    
T  5076313 tggtaaatttgaaacggctgcaaggcgcgagcaacatgtgcagggtggagagcagaattc 5076372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 301 - 495
Target Start/End: Original strand, 9459620 - 9459815
Alignment:
Q  301 aggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattccaacaactgatcggcttgtttcctttggatctagtgttct 400  Q
    |||||||||||||| ||||| | ||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9459620 aggtaaatttggaagggctgcaagacgcgagcaaaatgtgctggatggagagcagaattccaacaactgatcggcttgtttcctttggatctagtgttct 9459719  T
Q  401 tttcatcatatttcttaattcgttttctcaaca-nnnnnnnnngttgaaaaaaggttagagaagaatctgaatggaagcaaaggtgagatgatttt 495  Q
    ||||||||| ||||||| |||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9459720 tttcatcatctttcttagttcgttttctcaacatttttttttttttgaaaaaaggttagagaagaatctgaatggaagcaaaggtgagatgatttt 9459815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 214 - 360
Target Start/End: Complemental strand, 4412743 - 4412597
Alignment:
Q  214 gcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttgga 313  Q
    ||||||||||| | ||||||| ||||| |  | || |||||||||| || |||||| |||| ||||||||| |||||| |||||||||||||||||||||    
T  4412743 gcagtgttttatatttgcgcatcttaattgacacaacgttagttaattagcgcatagttttacacttgcgtgagttaattagcgcaaaggtaaatttgga 4412644  T
Q  314 acggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    ||||||| ||| |||||||||||||||||||||  |||||| |||||    
T  4412643 acggctgcagggcgcgagcaaaatgtgctgggtaaagagcagaattc 4412597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 219 - 360
Target Start/End: Original strand, 39047259 - 39047400
Alignment:
Q  219 gttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggc 318  Q
    |||| |||||||||  | ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||  ||||      
T  39047259 gtttaacacttgcgttatttaacctgcgcagcgttagttaactaacgcatagtttttcacttgcgttagttaactagcgcaaggataaatttaaaacgat 39047358  T
Q  319 tgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    |||||| |||||  |||||||| |||||| ||| || |||||    
T  39047359 tgtagggcgcgaataaaatgtgttgggtggagaacagaattc 39047400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 22675669 - 22675851
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    ||||| || |||||||||||| ||||||| ||||| |||||||||||||||||   ||| ||| |||||||   ||| | | ||| ||||| |||  | |    
T  22675669 tttgtataattttgatcgattatgtcgtactatccgataatcttgttaaactggcataattcgattcaattataagcgtgtaaagattacgagtcactaa 22675768  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgca 183  Q
    | |||||  ||||||| ||||||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||| ||||    
T  22675769 tgacacactttgcattgaatgcatataagtacaacatttaacgctgtactgatgtatcagtagagcgtgagttaactcacgca 22675851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 282 - 359
Target Start/End: Complemental strand, 37227065 - 37226988
Alignment:
Q  282 cgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaatt 359  Q
    ||||||||||||||| ||||||||||||||||| ||||| ||| |||||||||||||||||||||| |||||| ||||    
T  37227065 cgttagttaactagcacaaaggtaaatttggaatggctgcagggcgcgagcaaaatgtgctgggtgaagagcagaatt 37226988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 317
Target Start/End: Original strand, 41601562 - 41601663
Alignment:
Q  216 agtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaac 315  Q
    |||| ||||||||||| || ||||||||||||||| |||||||| |||| |||| ||||||| ||| |||| |||||||||||||  |||||||| ||||    
T  41601562 agtgatttacacttgcacatcttaacttgcgcagcattagttaattaacacatagtttttcatttgtgttaattaactagcgcaagagtaaatttagaac 41601661  T
Q  316 gg 317  Q
    ||    
T  41601662 gg 41601663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 32076863 - 32077115
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| |||||||||||| ||||||||||||  ||||| |||||||||||| |||| |||||||||||  | |||| | ||| |||  |||| || |    
T  32076863 tttgtgtaattttgatcgattatgtcgtattatcttataatgttgttaaactgacgtaattcggttcaattatgtgcatgtaaagattagtggtcattaa 32076962  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtg 200  Q
    | || ||  ||||||| |||||||              || || |||||| ||||||||||| ||| ||||||||||| |||| ||||||||||| || |    
T  32076963 tgacgcactttgcattgaatgcat--------------taatgttgtactaatatatcagta-agcatgagttaactcacgcatgtgttaacactctgcg 32077047  T
Q  201 tgggttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcat 268  Q
    || ||||||| | ||| |||||||||||||||   ||||| |  ||| ||||||||||||||||||||    
T  32077048 tgagttaactaacgcattgttttacacttgcgtttcttaagtcacgccgcgttagttaactaacgcat 32077115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 215 - 360
Target Start/End: Original strand, 14097511 - 14097656
Alignment:
Q  215 cagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaa 314  Q
    ||||||||||||| ||||  |||||| | ||||| |||||||||||||| |||||| ||| ||||||||||||||||||| | || |||||  || || |    
T  14097511 cagtgttttacacatgcgttacttaagtagcgcatcgttagttaactaatgcataaatttacacttgcgttagttaactatcacataggtattttgggca 14097610  T
Q  315 cggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
     || || ||| ||||||| ||| |||| ||| | ||||||||||||    
T  14097611 aggttggagggcgcgagcgaaaagtgcagggggaagagcaaaattc 14097656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 41601385 - 41601453
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaa 69  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||   |||||||||||||    
T  41601385 tttgtgtaattttgatcgattgtgtcgtattatccaataatcttattaaattggcataagtcggttcaa 41601453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 41601453 - 41601496
Alignment:
Q  133 aacatttattgctgtactgatatatcagtagagcgtgagttaac 176  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  41601453 aacatttattgttgtactgatatatcagtagagcgtgagttaac 41601496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 204 - 303
Target Start/End: Original strand, 22675839 - 22675938
Alignment:
Q  204 gttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaagg 303  Q
    ||||||| | |||||||||||||| |||| |  |||| |  |||| |||||||||||| ||||||| || | |||||| |||||||||||| ||||||||    
T  22675839 gttaactcacgcagtgttttacacatgcgtatgttaaatatcgcatcgttagttaacttacgcatagttatgcacttgggttagttaactaacgcaaagg 22675938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 41601009 - 41600959
Alignment:
Q  304 taaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagca 354  Q
    ||||||||||||||||| |||||||||| ||||||||| ||||| ||||||    
T  41601009 taaatttggaacggctgcaggacgcgagtaaaatgtgcagggtggagagca 41600959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 41601491 - 41601544
Alignment:
Q  187 gttaacactatgtgtgggttaacttatgcagtgttttacacttgcgcaacttaa 240  Q
    |||||||||||| ||| ||||||| | ||| |||||||||||||||||||||||    
T  41601491 gttaacactatgcgtgagttaactcacgcattgttttacacttgcgcaacttaa 41601544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 34279260 - 34279312
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactg 53  Q
    |||| ||| ||| |||||||| ||||||||||||| |||||||||||||||||    
T  34279260 tttgagtaatttggatcgattatgtcgtattatccgataatcttgttaaactg 34279312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 5943784 - 5943709
Alignment:
Q  216 agtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaa 291  Q
    |||||||||||||||| |   |||| ||||| ||||||||||||||| ||||||  ||| ||||||||| ||||||    
T  5943784 agtgttttacacttgcactctttaagttgcgtagcgttagttaactagcgcatacatttacacttgcgtgagttaa 5943709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 361
Target Start/End: Original strand, 23542884 - 23542943
Alignment:
Q  302 ggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattcc 361  Q
    |||| ||| |||| ||||| ||| ||||||| |||||||||||||| |||||||||||||    
T  23542884 ggtatattaggaatggctgcagggcgcgagcgaaatgtgctgggtgaagagcaaaattcc 23542943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 299
Target Start/End: Complemental strand, 15738829 - 15738751
Alignment:
Q  221 tttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgca 299  Q
    ||||||||||||| ||||||| |||||| || || |||| | ||||| || ||| |||||| | |||||||||||||||    
T  15738829 tttacacttgcgccacttaacatgcgcaacgctacttaatttacgcacaagtttacacttgtgctagttaactagcgca 15738751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 330
Target Start/End: Original strand, 36933396 - 36933450
Alignment:
Q  276 cacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcga 330  Q
    ||||||||||||||||||||||||||||||  || |||| ||||| ||| |||||    
T  36933396 cacttgcgttagttaactagcgcaaaggtattttaggaatggctgcagggcgcga 36933450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 3194578 - 3194623
Alignment:
Q  249 gcgttagttaactaacgcataatttttcacttgcgttagttaacta 294  Q
    ||||||||||| ||| ||||||||||  ||||||||||||||||||    
T  3194578 gcgttagttaagtaatgcataattttatacttgcgttagttaacta 3194623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 43693720 - 43693764
Alignment:
Q  316 ggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    ||||| ||| |||||||||||||||| ||||| ||||||||||||    
T  43693720 ggctgcagggcgcgagcaaaatgtgcagggtgaagagcaaaattc 43693764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 1031494 - 1031733
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||| | ||||||    
T  1031494 tttgtgtaattttgatcgattgtgtcgtattatccaataatcttgttaaactggtgtaagtcggttcaattacgagcatcttaaggttacgtgcctttga 1031593  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtg 200  Q
    | ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  1031594 tgacagatattgcattcaatgcatatcagtacatcatttattgctgtactgatatattagtagagcgtgagttaactcgcgcaagtgttaacactatgcg 1031693  T
Q  201 tgggttaacttatgcagtgttttacacttgcgcaacttaa 240  Q
    || ||||||| | |||||||||||||||||||||||||||    
T  1031694 tgagttaactcacgcagtgttttacacttgcgcaacttaa 1031733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 23236259 - 23236513
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||||  ||||| |||||| | |||| ||||||||    
T  23236259 tttgtgtaattttgatcgattgtgtcgtattatccgataatcttgttaaattgacgtaattcggttcaatcacgagcgtcttaaagctacgagtctttga 23236358  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtg 200  Q
    | |||||   |||||||||||||      ||||||||| | || |||| |||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  23236359 tgacacaa--tgcattcaatgcaa-----tacaacattaaatgttgtattgatatatcagtagagcgtgagttaactcgcgcatgtgttaacactatgcg 23236451  T
Q  201 tgggttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaacta 262  Q
    |  ||||||| |   | ||||||||||||||||||||||| |  ||||  ||||||||||||    
T  23236452 ttagttaactaacagaatgttttacacttgcgcaacttaattgacgcaatgttagttaacta 23236513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 214 - 354
Target Start/End: Original strand, 1031749 - 1031889
Alignment:
Q  214 gcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttgga 313  Q
    ||||||||||||||||||||| |||||||||||||  ||| |||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||    
T  1031749 gcagtgttttacacttgcgcatcttaacttgcgcattgtttgttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttgga 1031848  T
Q  314 acggctgtaggacgcgagcaaaatgtgctgggtgtagagca 354  Q
    ||||||| | |  ||||||||||||||||||||| ||||||    
T  1031849 acggctggacggtgcgagcaaaatgtgctgggtggagagca 1031889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 214 - 360
Target Start/End: Original strand, 35018706 - 35018852
Alignment:
Q  214 gcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttgga 313  Q
    ||||||||||||||||| ||   |||| |||||||||||||||||| ||||||||| |||| ||||||||| |||||||||| || | ||||||||||||    
T  35018706 gcagtgttttacacttgtgctctttaagttgcgcagcgttagttaaataacgcatagttttacacttgcgtgagttaactagtgcgagggtaaatttgga 35018805  T
Q  314 acggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    ||||||| ||||||||||||||||||| |||||| |||||| |||||    
T  35018806 acggctgcaggacgcgagcaaaatgtgttgggtgaagagcagaattc 35018852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 215 - 360
Target Start/End: Original strand, 7527033 - 7527178
Alignment:
Q  215 cagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaa 314  Q
    |||||||||||||||||||    ||| ||||||| ||||||||||||||| ||||||||| ||||||||| ||||||||||||||| ||||||||| |||    
T  7527033 cagtgttttacacttgcgcgctgtaagttgcgcaacgttagttaactaacacataattttacacttgcgtgagttaactagcgcaagggtaaatttagaa 7527132  T
Q  315 cggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    |||||| ||| |||||||||||||| |||| || |||||| |||||    
T  7527133 cggctgcagggcgcgagcaaaatgtactggatgaagagcataattc 7527178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 294
Target Start/End: Complemental strand, 9929685 - 9929595
Alignment:
Q  204 gttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaacta 294  Q
    ||||||| |||||||||||||||| ||||  |||||| |  |||||||||||||||||||| |||| |||| ||||||||||| |||||||    
T  9929685 gttaactcatgcagtgttttacacatgcgttacttaagtaacgcagcgttagttaactaacacatagttttacacttgcgttaattaacta 9929595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 7919335 - 7919378
Alignment:
Q  251 gttagttaactaacgcataatttttcacttgcgttagttaacta 294  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  7919335 gttagttaactaacgcataaattttcacttgcgttagttaacta 7919378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 276 - 354
Target Start/End: Complemental strand, 800399 - 800321
Alignment:
Q  276 cacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagca 354  Q
    ||||||||  |||||||  |||||  |||||| |||||||||||| ||| |||||||||| ||||||||||||||||||    
T  800399 cacttgcgcaagttaacatgcgcaggggtaaaattggaacggctgcagggcgcgagcaaattgtgctgggtgtagagca 800321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 237 - 331
Target Start/End: Complemental strand, 4362067 - 4361973
Alignment:
Q  237 ttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgag 331  Q
    |||| ||||||| ||||||||||||| |||||| |||| |||||  || ||||||||| ||||| ||||||||| |||||| || ||| ||||||    
T  4362067 ttaagttgcgcaacgttagttaactagcgcatagttttacacttatgtgagttaactaacgcaagggtaaatttagaacggttgcagggcgcgag 4361973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 4410235 - 4410282
Alignment:
Q  247 cagcgttagttaactaacgcataatttttcacttgcgttagttaacta 294  Q
    |||||||||||||||||  |||| |||| |||||||||||||||||||    
T  4410235 cagcgttagttaactaatacatagttttacacttgcgttagttaacta 4410282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 291
Target Start/End: Complemental strand, 32879663 - 32879621
Alignment:
Q  249 gcgttagttaactaacgcataatttttcacttgcgttagttaa 291  Q
    ||||||||||| |||| ||||||||| ||||||||||||||||    
T  32879663 gcgttagttaagtaacacataattttacacttgcgttagttaa 32879621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 4319494 - 4319429
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggtt 66  Q
    |||| ||| ||| |||||||| ||||||||||||| |||||||| ||||||||  |||| ||||||    
T  4319494 tttgagtaatttggatcgattatgtcgtattatccgataatcttcttaaactggcgtaattcggtt 4319429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 31484039 - 31483983
Alignment:
Q  10 ttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggtt 66  Q
    |||||||| ||| ||| ||||||||| |||||||||||||||||  |||| ||||||    
T  31484039 ttttgatctattatgttgtattatccgataatcttgttaaactggcgtaattcggtt 31483983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 44226232 - 44226471
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||| |||||||||    
T  44226232 tttgtgtaattttgattgattgtgtcgtattatccaataatcttgttaaactggcgtaagtcggttcaattacgaccatcttaaggttacaggtctttga 44226331  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtg 200  Q
    | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||| |    
T  44226332 tgacacatattgcattcaatgcatatcagtacaacatttattgttgtactgatatatcattaaagcgtgagttaacacgcgcaagtgttaacactatgcg 44226431  T
Q  201 tgggttaacttatgcagtgttttacacttgcgcaacttaa 240  Q
    || ||||||| | |||||||| ||||||||||||||||||    
T  44226432 tgagttaactcacgcagtgttctacacttgcgcaacttaa 44226471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 23943480 - 23943842
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||| |   |||| |||||||||||  ||||||||||| ||||| |||||||||    
T  23943480 tttgtgtaattttgatcgattttgtcgtattatccaataatcttgttaaattagcgtaattcggttcaattatgagcatcttaaagttacaggtctttga 23943579  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgtg 200  Q
    | | |||  |||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| ||||||||||||||||| |||||||||||||| |    
T  23943580 tgatacaatttgcattcaatgcatatcagtacatcatttattgttgtattgatatatcagtagagtgtgagttaactcgcgcatgtgttaacactatgcg 23943679  T
Q  201 tgggttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaa 300  Q
     | ||||||| | |  |||||| |||||||||||| ||||    |||| ||||||||||||| |||||| |||| ||| ||||||||||||||| |||||    
T  23943680 cgagttaactaacgttgtgtttaacacttgcgcaagttaatagacgcaacgttagttaactagcgcatagttttacacctgcgttagttaactaacgcaa 23943779  T
Q  301 aggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattccaa 363  Q
     |||| |||| ||||||||| ||  |||||||||||||||| ||||| |||||| ||||||||    
T  23943780 gggtatatttagaacggctgcagagcgcgagcaaaatgtgcagggtgaagagcagaattccaa 23943842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 214 - 360
Target Start/End: Original strand, 44226487 - 44226633
Alignment:
Q  214 gcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttgga 313  Q
    |||||||||||||||  |||| ||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| |||| |||||||||| |    
T  44226487 gcagtgttttacactgccgcatcttaacttgcgcagcgttagttaactaacacatagtttttcacttgcgttggttaactagagcaagggtaaatttgaa 44226586  T
Q  314 acggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    ||||||  ||| | ||| |||||||||||||||| |||||| |||||    
T  44226587 acggctacagggcacgaacaaaatgtgctgggtggagagcagaattc 44226633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 249 - 359
Target Start/End: Original strand, 432933 - 433043
Alignment:
Q  249 gcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgt 348  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||  ||  ||||||||||||||| |||||     
T  432933 gcgttagttaactaacgcataattttacacttgcgttagttaactagcgcaagggtaaatttgaaacggctgccgggtgcgagcaaaatgtgcagggtgg 433032  T
Q  349 agagcaaaatt 359  Q
    |||||||||||    
T  433033 agagcaaaatt 433043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 204 - 339
Target Start/End: Original strand, 38458304 - 38458439
Alignment:
Q  204 gttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaagg 303  Q
    ||||||| | |||||||||||||||||| |   |||| |||||||||||||||||| || ||||||  ||| ||||||||| |||||||||||  || |     
T  38458304 gttaactcacgcagtgttttacacttgcactctttaagttgcgcagcgttagttaagtagcgcatatatttacacttgcgtgagttaactagcataaggt 38458403  T
Q  304 taaatttggaacggctgtaggacgcgagcaaaatgt 339  Q
    ||||||||||||||||| ||| ||||| ||||||||    
T  38458404 taaatttggaacggctgcagggcgcgaacaaaatgt 38458439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 249 - 291
Target Start/End: Complemental strand, 31877470 - 31877428
Alignment:
Q  249 gcgttagttaactaacgcataatttttcacttgcgttagttaa 291  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  31877470 gcgttagttaactaacgcataattttacacttgcgttagttaa 31877428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 46273487 - 46273551
Alignment:
Q  235 acttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgca 299  Q
    |||||| | ||||||||||||||||||||| ||| | ||| ||||||||||||||||||| ||||    
T  46273487 acttaattagcgcagcgttagttaactaacacattaatttacacttgcgttagttaactaacgca 46273551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 360
Target Start/End: Complemental strand, 47441690 - 47441554
Alignment:
Q  224 acacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtag 323  Q
    |||||||||  | ||||||  |||||| |||||||| ||||||| | |||  ||||||||||| ||||||| |||| ||| |  ||||| | ||||  ||    
T  47441690 acacttgcgtgagttaactcacgcagctttagttaagtaacgcagagtttaacacttgcgttacttaactaacgcagaggcatttttggcaaggctacag 47441591  T
Q  324 gacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    ||||||||||||| |||| ||||| |||||| |||||    
T  47441590 gacgcgagcaaaaagtgcagggtgaagagcataattc 47441554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 188
Target Start/End: Original strand, 24504022 - 24504099
Alignment:
Q  110 ttgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgt 188  Q
    ||||||| |||||| ||||||||| |||||| || |||||||||||||| ||| || |||||||||||| |||| ||||    
T  24504022 ttgcattgaatgcacatcagtacatcatttaatgttgtactgatatatccgta-agtgtgagttaactcacgcaggtgt 24504099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 30665644 - 30665700
Alignment:
Q  249 gcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggta 305  Q
    |||| |||||||||||||| |||||| |||||||| ||||||| |||||||| ||||    
T  30665644 gcgtgagttaactaacgcagaattttacacttgcgctagttaattagcgcaagggta 30665700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 36653321 - 36653273
Alignment:
Q  251 gttagttaactaacgcataatttttcacttgcgttagttaactagcgca 299  Q
    |||||||||||||| || |||||| ||||||||||||||||||| ||||    
T  36653321 gttagttaactaacacacaattttacacttgcgttagttaactaacgca 36653273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 295
Target Start/End: Original strand, 37451030 - 37451104
Alignment:
Q  221 tttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactag 295  Q
    ||||||||||||| ||||||| |||||| || || ||||||  |||| || ||| |||||||| |||||||||||    
T  37451030 tttacacttgcgccacttaacatgcgcaacgctacttaacttgcgcacaaatttacacttgcgctagttaactag 37451104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 299
Target Start/End: Complemental strand, 40143965 - 40143887
Alignment:
Q  221 tttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgca 299  Q
    |||||||||| || ||||||| |||||| || || ||||||  |||| || ||| |||||||| |||||||||||||||    
T  40143965 tttacacttgtgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgca 40143887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19363856 - 19363921
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggtt 66  Q
    |||| ||| ||| |||||||| ||||||||||||| |||||||| ||||||||  |||| ||||||    
T  19363856 tttgagtaatttggatcgattatgtcgtattatccgataatcttcttaaactggcgtaattcggtt 19363921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 38386585 - 38386520
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggtt 66  Q
    |||| ||| ||| |||| ||| ||||||||||||| |||||||||||||||||  |||| ||||||    
T  38386585 tttgagtaatttggatcaattatgtcgtattatccgataatcttgttaaactggcgtaattcggtt 38386520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4839 - 4891
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactg 53  Q
    |||| ||| ||| |||||||| ||||||||||||  |||||||||||||||||    
T  4839 tttgagtaatttggatcgattatgtcgtattatctgataatcttgttaaactg 4891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 341
Target Start/End: Original strand, 23245936 - 23246032
Alignment:
Q  245 cgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgc 341  Q
    ||||||||||||||| ||||||| | |||  ||||| |||||||||||||| |||| || |  ||||||| ||||| |||  |||||| ||| ||||    
T  23245936 cgcagcgttagttaagtaacgcagagtttaacacttacgttagttaactagtgcaagggcatttttggaatggctgcagggtgcgagcgaaaagtgc 23246032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 3e-74; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 53772050 - 53772227
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||    
T  53772050 tttgtgtaattttgatcgattgtgtcgtattatccaataatcttgttaaactggcgtaagtcggttcaattacgagcatcttaaggttacgggtctttga 53772149  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactc 178  Q
    | |||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| ||||||||||||||||||||    
T  53772150 tgacacatattgcattcaatgcatataagtacaacacttatcgctgtactgatatattagtagagcgtgagttaactc 53772227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 20513774 - 20513592
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttga 100  Q
    |||||||| ||| |||||||| |||||||| |||| |||||||||||||||||  |||| ||||||||||| ||||| | ||||||||||||||| ||||    
T  20513774 tttgtgtaatttggatcgattatgtcgtatgatccgataatcttgttaaactggcgtaattcggttcaattacgagcgtgttaaggttacgggtcattga 20513675  T
Q  101 taacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgca 183  Q
    | |||||  ||||||||||||||||||||||||||||| | || ||||||| |||||||||||||||||||||||||| ||||    
T  20513674 ttacacaatttgcattcaatgcatatcagtacaacattaaatgttgtactggtatatcagtagagcgtgagttaactcacgca 20513592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 54336526 - 54336768
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaa-ctgaggtaagtcggttcaattgcgagcatcttaaggttacgggtctttg 99  Q
    |||||||| |||||| ||||| |||| |||||||| ||||| |||||||| |||| |||| |||||||||||  |||  | | ||| |||||| || ||     
T  54336526 tttgtgtaattttgaacgattatgtcatattatccgataattttgttaaaactgacgtaattcggttcaattatgagtgtgtaaagattacggatcatta 54336625  T
Q  100 ataacacatattgcattcaatgcatatcagtacaacatttattgctgtactgatatatcagtagagcgtgagttaactcgcgcaagtgttaacactatgt 199  Q
     | |||||  ||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||     
T  54336626 gtgacacacgttgcattgaatgcatatcagtacaacatttaatgctttactgatatatcagtagagcgtgagttaactcacgcatgtgttaacactatgc 54336725  T
Q  200 gtgggttaacttatgcagtgttttacacttgcgcaacttaact 242  Q
    ||  ||||||| | |||||||||||||| || ||| |||||||    
T  54336726 gtcagttaactcacgcagtgttttacacatgtgcatcttaact 54336768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 240 - 360
Target Start/End: Complemental strand, 34437098 - 34436978
Alignment:
Q  240 acttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgt 339  Q
    ||||||||| ||||||||||||| ||||||  ||| ||||||||| |||||||||||| || ||||||||||||||||||| ||||||||||||||||||    
T  34437098 acttgcgcatcgttagttaactagcgcatacatttacacttgcgtgagttaactagcgtaagggtaaatttggaacggctgcaggacgcgagcaaaatgt 34436999  T
Q  340 gctgggtgtagagcaaaattc 360  Q
    ||| | || |||||| |||||    
T  34436998 gcttgatgaagagcagaattc 34436978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 221 - 339
Target Start/End: Original strand, 53772274 - 53772392
Alignment:
Q  221 tttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctg 320  Q
    ||||||||||  || ||||||||||||||||||| ||||||||| ||||||||||||||| ||||| |||||| || ||| ||||||||| |||| ||||    
T  53772274 tttacacttgtacatcttaacttgcgcagcgttaattaactaacacataatttttcacttacgttaattaacttgcacaagggtaaattttgaacagctg 53772373  T
Q  321 taggacgcgagcaaaatgt 339  Q
     ||||||||||||||||||    
T  53772374 caggacgcgagcaaaatgt 53772392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 249 - 360
Target Start/End: Complemental strand, 46183048 - 46182937
Alignment:
Q  249 gcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgt 348  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| |||||||| |||  | |||||||||||||  ||||     
T  46183048 gcgttagttaactaacgcataattttacacttgcgttatttaactagcgcaagggtaaatttgaaacggctgcagggtgtgagcaaaatgtgcaaggtgg 46182949  T
Q  349 agagcaaaattc 360  Q
    |||||| |||||    
T  46182948 agagcagaattc 46182937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 360
Target Start/End: Original strand, 46637055 - 46637170
Alignment:
Q  245 cgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgg 344  Q
    |||| ||||| ||||||| |||||| |||| || ||||||||||||||||||| || | ||||||||||||||||| | | |||||||||||||||| ||    
T  46637055 cgcatcgttacttaactagcgcatagttttacatttgcgttagttaactagcgtaaggataaatttggaacggctgcatggcgcgagcaaaatgtgcagg 46637154  T
Q  345 gtgtagagcaaaattc 360  Q
     || |||||| |||||    
T  46637155 atggagagcataattc 46637170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 305
Target Start/End: Complemental strand, 20513604 - 20513503
Alignment:
Q  204 gttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaagg 303  Q
    ||||||| | |||||||||||||| || ||| ||||| |  | |||||||||||||||| |||||| |||| ||||||||||||||||||| ||||||||    
T  20513604 gttaactcacgcagtgttttacacatgtgcatcttaattgacacagcgttagttaactatcgcatagttttacacttgcgttagttaactaacgcaaagg 20513505  T
Q  304 ta 305  Q
    ||    
T  20513504 ta 20513503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 29523033 - 29522953
Alignment:
Q  204 gttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgt 284  Q
    ||||||| | ||||||||||||||||||||   |||| |||||||||||||||||||||||||||| |||| |||||||||    
T  29523033 gttaactcacgcagtgttttacacttgcgcgctttaagttgcgcagcgttagttaactaacgcatagttttacacttgcgt 29522953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 277 - 360
Target Start/End: Complemental strand, 29522253 - 29522171
Alignment:
Q  277 acttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    |||||||| | |||| |||||||||||||||||||||||||||| ||| | |||||||||| ||||||||| |||||| |||||    
T  29522253 acttgcgtgaattaattagcgcaaaggtaaatttggaacggctgcagg-cacgagcaaaatatgctgggtgaagagcagaattc 29522171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 360
Target Start/End: Original strand, 30934058 - 30934119
Alignment:
Q  298 caaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| ||||    
T  30934058 caaaggtaaattcggaacggctgtaggacgcgagcaaaatgtgcagggtg-agagcaagattc 30934119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 366
Target Start/End: Original strand, 41650894 - 41651039
Alignment:
Q  221 tttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctg 320  Q
    ||||||||||||| ||||||| |||||| || || ||||||  |||| || ||| |||||||| ||||||||||||| |  || |  || || | | |||    
T  41650894 tttacacttgcgccacttaacatgcgcaacgctacttaacttgcgcacaagtttacacttgcgctagttaactagcggatgggcattttgggcatgactg 41650993  T
Q  321 taggacgcgagcaaaatgtgctgggtgtagagcaaaattccaacaa 366  Q
    ||||  |||||| |||||||||||||| |||||| ||||| |||||    
T  41650994 tagggtgcgagcgaaatgtgctgggtgaagagcagaattcaaacaa 41651039  T

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Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 30842112 - 30842166
Alignment:
Q  245 cgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgca 299  Q
    |||||||||||||||||||||||||  ||| || || ||||||||||||||||||    
T  30842112 cgcagcgttagttaactaacgcataggtttacaattacgttagttaactagcgca 30842166  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 7789945 - 7789990
Alignment:
Q  249 gcgttagttaactaacgcataatttttcacttgcgttagttaacta 294  Q
    ||||||||||| |||||||||||||| ||| |||||||||||||||    
T  7789945 gcgttagttaagtaacgcataattttacacctgcgttagttaacta 7789990  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 15041092 - 15041027
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggtt 66  Q
    |||| ||| ||| |||||||| ||||||||||||| |||||||||||||||||  |||| ||||||    
T  15041092 tttgagtaatttggatcgattatgtcgtattatccgataatcttgttaaactggcgtaattcggtt 15041027  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19871808 - 19871873
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggtt 66  Q
    |||| ||| ||| |||||||| |||| |||||||| |||||||||||||||||| |||| ||||||    
T  19871808 tttgagtaatttagatcgattatgtcatattatccgataatcttgttaaactgacgtaattcggtt 19871873  T

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Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 34084493 - 34084428
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactgaggtaagtcggtt 66  Q
    |||| ||| ||| |||||||| ||||||||||||| |||||||||||||||||  |||| ||||||    
T  34084493 tttgagtaatttggatcgattatgtcgtattatccgataatcttgttaaactggcgtaattcggtt 34084428  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 51171033 - 51170984
Alignment:
Q  250 cgttagttaactaacgcataatttttcacttgcgttagttaactagcgca 299  Q
    |||||||||| |||||||||||||| ||||||| ||||||||||| ||||    
T  51171033 cgttagttaagtaacgcataattttacacttgcattagttaactaacgca 51170984  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 294
Target Start/End: Complemental strand, 51815183 - 51815138
Alignment:
Q  249 gcgttagttaactaacgcataatttttcacttgcgttagttaacta 294  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||||    
T  51815183 gcgttagttaactaatgcataattttacacttgcattagttaacta 51815138  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 53630307 - 53630355
Alignment:
Q  251 gttagttaactaacgcataatttttcacttgcgttagttaactagcgca 299  Q
    |||||||||||||||||| | ||| ||||||||||||||||||| ||||    
T  53630307 gttagttaactaacgcattaatttacacttgcgttagttaactaacgca 53630355  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 7666079 - 7666040
Alignment:
Q  14 gatcgattgtgtcgtattatccaataatcttgttaaactg 53  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  7666079 gatcgattatgtcgtattatccgataatcttgttaaactg 7666040  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 294
Target Start/End: Original strand, 6778619 - 6778709
Alignment:
Q  204 gttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaacta 294  Q
    ||||||| | |||||| ||||||| ||||  |||||| | || || ||||||||||||||| ||| | ||| |||||| ||||||||||||    
T  6778619 gttaactcacgcagtgctttacacatgcgttacttaagtagcacaacgttagttaactaacacattaatttacacttgtgttagttaacta 6778709  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 25226848 - 25226806
Alignment:
Q  252 ttagttaactaacgcataatttttcacttgcgttagttaacta 294  Q
    |||||||| ||||| |||||||| |||||||||||||||||||    
T  25226848 ttagttaagtaacgtataattttacacttgcgttagttaacta 25226806  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 39417919 - 39417993
Alignment:
Q  286 agttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    ||||||||||||||| ||||  ||||| | ||||| ||| |||||||||||||||  ||||| |||||| |||||    
T  39417919 agttaactagcgcaagggtatttttggcatggctggagggcgcgagcaaaatgtggagggtgaagagcagaattc 39417993  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 35068964 - 35069017
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaactga 54  Q
    |||| ||| ||| |||||||| ||||||||||||  ||||||||||||||||||    
T  35068964 tttgagtaatttggatcgattatgtcgtattatctgataatcttgttaaactga 35069017  T

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Target: scaffold0015 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 164 - 294
Target Start/End: Original strand, 33506 - 33636
Alignment:
Q  164 agcgtgagttaactcgcgcaagtgttaacactatgtgtgggttaacttatgcagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaa 263  Q
    ||||||||||||||| |||| |||||||| || || ||| ||||||| | |||||||||| ||| |||||| || || |  |||| ||||||||||||||    
T  33506 agcgtgagttaactcacgcatgtgttaacgctctgcgtgagttaactcacgcagtgtttttcacatgcgcatctaaagtgacgcaacgttagttaactaa 33605  T
Q  264 cgcataatttttcacttgcgttagttaacta 294  Q
    |||||  |||| |||||||||||||||||||    
T  33606 cgcattgttttacacttgcgttagttaacta 33636  T

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Target: scaffold0015; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 33375 - 33426
Alignment:
Q  1 tttgtgtagttttgatcgattgtgtcgtattatccaataatcttgttaaact 52  Q
    |||||||| |||||||| ||| ||||||| ||||| ||||||||||||||||    
T  33375 tttgtgtaattttgatcaattatgtcgtactatccgataatcttgttaaact 33426  T

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Target: scaffold0012 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 249 - 353
Target Start/End: Original strand, 36266 - 36370
Alignment:
Q  249 gcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaacggctgtaggacgcgagcaaaatgtgctgggtgt 348  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||| ||||| || |  ||||| | ||||| ||||||||||  ||| ||||||||||     
T  36266 gcgttagttaagtaacgcataattttacacttgcgttagttaactaacgcaagggcatttttgggatggctgcaggacgcgagtgaaaagtgctgggtga 36365  T
Q  349 agagc 353  Q
    |||||    
T  36366 agagc 36370  T

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Target: scaffold0007 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 216 - 360
Target Start/End: Complemental strand, 256535 - 256391
Alignment:
Q  216 agtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaac 315  Q
    |||||||||||||||||| | |||| ||| | ||||||||||||||||| ||||  ||| ||||||||||||||||||| ||||  ||||  || || ||    
T  256535 agtgttttacacttgcgctagttaagttgtgtagcgttagttaactaacacatacatttacacttgcgttagttaactaacgcatgggtattttgggcac 256436  T
Q  316 ggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
    | ||| ||| |  ||||||||||||| ||||| |||||| |||||    
T  256435 gcctgcagggcctgagcaaaatgtgcagggtgaagagcagaattc 256391  T

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Target: scaffold0408 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 215 - 360
Target Start/End: Original strand, 7854 - 7999
Alignment:
Q  215 cagtgttttacacttgcgcaacttaacttgcgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgcaaaggtaaatttggaa 314  Q
    ||||||||||||| ||||  |||||| | ||||| |||||||||||||| |||||| ||| ||||||||||||||||||| | || |||||  || || |    
T  7854 cagtgttttacacatgcgttacttaagtagcgcatcgttagttaactaatgcataaatttacacttgcgttagttaactatcacataggtattttgggca 7953  T
Q  315 cggctgtaggacgcgagcaaaatgtgctgggtgtagagcaaaattc 360  Q
     || || ||| ||||||| ||| |||| ||| | ||||||||||||    
T  7954 aggttggagggcgcgagcgaaaagtgcagggggaagagcaaaattc 7999  T

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Target: scaffold0010 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 28649 - 28599
Alignment:
Q  249 gcgttagttaactaacgcataatttttcacttgcgttagttaactagcgca 299  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  28649 gcgttagttaactaacgcataattttacacttgcgttagttaactaacgca 28599  T

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Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 185490 - 185436
Alignment:
Q  245 cgcagcgttagttaactaacgcataatttttcacttgcgttagttaactagcgca 299  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||    
T  185490 cgcagcgttagttaactaacgcatagttttacacttgcgttagttaactaacgca 185436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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