View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18658_high_13 (Length: 241)
Name: NF18658_high_13
Description: NF18658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18658_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 38249854 - 38249633
Alignment:
| Q |
17 |
ataacttcagcattagtccgacacagacgaagagtatctgagtaggagataaagcgagggtaaaaaccacaactatgttggcaaatttcctccaccatca |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38249854 |
ataacttcagcattagtccgacacaaacgaagagtatctgagtaggagataaagcgagggtaaaaaccacaactatgttggcaaatttcctccaccatca |
38249755 |
T |
|
| Q |
117 |
tatatcgttcacagtccaaaccgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataaccataaaccctctaacattaggatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38249754 |
tatatcgttcacagtccaaaccgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataaccataaaccctctaacattaggatc |
38249655 |
T |
|
| Q |
217 |
tttctccttcaatccctatgct |
238 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
38249654 |
tttctccttcaatcccaatgct |
38249633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 20655704 - 20655841
Alignment:
| Q |
101 |
atttcctccaccatcatatatcgttcacagtccaaaccgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataaccataaacc |
200 |
Q |
| |
|
||||| || ||||||||||| | ||||| |||||||| ||| ||||| || |||| |||| ||||| ||| |||| ||| |||||||||||||||| |
|
|
| T |
20655704 |
atttcttcgaccatcatataactttcaccctccaaaccataaccgtaaagtttctctttcgtaggaaaaactaatagattaccattcataaccataaacc |
20655803 |
T |
|
| Q |
201 |
ctctaacattaggatctttctccttcaatccctatgct |
238 |
Q |
| |
|
||||||||||||||| | |||| ||||||||| ||||| |
|
|
| T |
20655804 |
ctctaacattaggatttgtctcattcaatcccaatgct |
20655841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 20657354 - 20657286
Alignment:
| Q |
162 |
tagcaaaaattaaaagatcaccgttcataaccataaaccctctaacattaggatctttctccttcaatc |
230 |
Q |
| |
|
||||||||| ||| |||| ||| ||||||| ||||||||||||||||||||||| | |||| ||||||| |
|
|
| T |
20657354 |
tagcaaaaactaagagattaccattcataaacataaaccctctaacattaggatttgtctcattcaatc |
20657286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 12035623 - 12035742
Alignment:
| Q |
92 |
tgttggcaaatttcctccaccatcatatatcgttcacagtccaaaccgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataa |
191 |
Q |
| |
|
||||| || ||||| || ||||||||||| | ||||| |||||||| | ||||||| || ||||| |||||||||| || |||| || ||||||| |
|
|
| T |
12035623 |
tgttgacacatttcttcgaccatcatataactttcaccctccaaaccatagctgtaaagtttctcttccgtagcaaaaacgaagagattacgattcataa |
12035722 |
T |
|
| Q |
192 |
ccataaaccctctaacatta |
211 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
12035723 |
ccataaaccctctaacatta |
12035742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 12037251 - 12037137
Alignment:
| Q |
101 |
atttcctccaccatcatatatcgttcacagtccaaaccgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataaccataaacc |
200 |
Q |
| |
|
||||| || ||||||||||| | ||||| | |||||| ||||||||| || |||| ||||||||| ||| |||| ||| |||||||||||||||| |
|
|
| T |
12037251 |
atttcttcgaccatcatataactttcacccttcaaaccataactgtaaagtttctctttcatagcaaaaactaatagattaccattcataaccataaacc |
12037152 |
T |
|
| Q |
201 |
ctctaacattaggat |
215 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
12037151 |
ctctaacatgaggat |
12037137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 230
Target Start/End: Complemental strand, 22177834 - 22177705
Alignment:
| Q |
101 |
atttcctccaccatcatatatcgttcacagtccaaaccgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataaccataaacc |
200 |
Q |
| |
|
||||| || ||||||||||| | ||||| |||||||| |||| |||| || ||||| |||||||| | ||| |||| ||| |||||||| ||||||| |
|
|
| T |
22177834 |
atttcttcgaccatcatataactttcaccctccaaaccataactataaagtttctcttccgtagcaaagactaagagattaccattcataacaataaacc |
22177735 |
T |
|
| Q |
201 |
ctctaacattaggatctttctccttcaatc |
230 |
Q |
| |
|
|||||||||| |||| | |||| ||||||| |
|
|
| T |
22177734 |
ctctaacattgggatttgtctcattcaatc |
22177705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 22169499 - 22169431
Alignment:
| Q |
161 |
gtagcaaaaattaaaagatcaccgttcataaccataaaccctctaacattaggatctttctccttcaat |
229 |
Q |
| |
|
|||||||| | ||| |||| ||| |||||||||||||||||||||||||| |||| | |||| |||||| |
|
|
| T |
22169499 |
gtagcaaagactaagagattaccattcataaccataaaccctctaacattgggatttgtctcattcaat |
22169431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University