View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18658_high_15 (Length: 241)
Name: NF18658_high_15
Description: NF18658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18658_high_15 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 11111425 - 11111665
Alignment:
| Q |
1 |
attattctcaacaccgggtgcagataccattagcattgtcaacagctttgcaaatagccaaaatgttttctttcaaaactttataaattcaatgattaaa |
100 |
Q |
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| T |
11111425 |
attattctcaacaccgggtgcagataccattagcattgtcaacagctttgcaaatagccaaaatgttttctttcagaactttataaattcaatgattaaa |
11111524 |
T |
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| Q |
101 |
atgggtaatattgatgtgcttaccggaaagaaaggagaaattagaaaacaatgcaattttattaacaagaaatcttctgaattggatcttggcattgtgg |
200 |
Q |
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| T |
11111525 |
atgggtaatattgatgtgcttaccggaaagaaaggagaaattagaaaacaatgcaattttattaacaagaaatcttctgaattggatcttggcattgtgg |
11111624 |
T |
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| Q |
201 |
cctctacagaatcaatggaaggagatatggttagttcaatc |
241 |
Q |
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||||| |||||||||||||||| |||||||||||||||||| |
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| T |
11111625 |
cctctgcagaatcaatggaaggggatatggttagttcaatc |
11111665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 11119200 - 11119433
Alignment:
| Q |
5 |
ttctcaacaccgggtgcagataccattagcattgtcaacagctttgcaaatagccaaaatgttttctttcaaaactttataaattcaatgattaaaatgg |
104 |
Q |
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| T |
11119200 |
ttctcaacaccgggtgcagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgg |
11119299 |
T |
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| Q |
105 |
gtaatattgatgtgcttaccggaaagaaaggagaaattagaaaacaatgcaattttattaacaagaaatcttctgaattggatcttggcattgtggcctc |
204 |
Q |
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| T |
11119300 |
gtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtgacct- |
11119398 |
T |
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| Q |
205 |
tacagaatcaatggaaggagatatggttagttcaatc |
241 |
Q |
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| T |
11119399 |
--cagaatcaatggagggggatatggttagttcaatc |
11119433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 10793351 - 10793130
Alignment:
| Q |
19 |
tgcagataccattagcattgtcaacagctttgcaaatagccaaaatgttttctttcaaaactttataaattcaatgattaaaatgggtaatattgatgtg |
118 |
Q |
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| T |
10793351 |
tgcagataccactagcattgttaataactttgccaataaccaaagtgctttctttgagagctttaagaaagcaatgattaaaatgggtaatattggtgtg |
10793252 |
T |
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| Q |
119 |
cttaccggaaagaaaggagaaattagaaaacaatgcaattttattaacaagaaatcttctgaattggatcttggcattgtggcctctacagaatcaatgg |
218 |
Q |
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| T |
10793251 |
cttaccggaaagaaaggagaaataaggaaacaatgcaattttgttaacaaaaaatcttctgagttagatcttgccgctctggtctccacagaatcatttg |
10793152 |
T |
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| Q |
219 |
aaggagatatggttagttcaat |
240 |
Q |
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| T |
10793151 |
atggggatatggttagttcaat |
10793130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 11137826 - 11137899
Alignment:
| Q |
92 |
atgattaaaatgggtaatattgatgtgcttaccggaaagaaaggagaaattagaaaacaatgcaattttattaa |
165 |
Q |
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| T |
11137826 |
atgattaaaatgggtaatattggtgtgctgaccgggaaaaaaggagagattagaaaacattgcaattttgttaa |
11137899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 11156766 - 11156842
Alignment:
| Q |
90 |
caatgattaaaatgggtaatattgatgtgcttaccggaaagaaaggagaaattagaaaacaatgcaattttattaac |
166 |
Q |
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| T |
11156766 |
caatgattaaaatgggcaatattggtgtgctaacagggacgaaaggagagattagaaaacaatgcaactttgttaac |
11156842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 165
Target Start/End: Original strand, 11146044 - 11146204
Alignment:
| Q |
5 |
ttctcaacaccgggtgcagataccattagcattgtcaacagctttgcaaatagccaaaatgttttctttcaaaactttataaattcaatgattaaaatgg |
104 |
Q |
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| T |
11146044 |
ttctcaacatctggtgctgataccattagcattgtcaacaactttgccactgatcaaaaagctttttttgagagctttaaggctgctatgattaaaatgg |
11146143 |
T |
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| Q |
105 |
gtaatattgatgtgcttaccggaaagaaaggagaaattagaaaacaatgcaattttattaa |
165 |
Q |
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| T |
11146144 |
gaaatattggtgtgttaaccgggaaccaaggagagattagaaaacaatgcaactttgttaa |
11146204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 11156681 - 11156720
Alignment:
| Q |
5 |
ttctcaacaccgggtgcagataccattagcattgtcaaca |
44 |
Q |
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| T |
11156681 |
ttctcaacatccggtgcagataccattagcattgtcaaca |
11156720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 11150013 - 11150061
Alignment:
| Q |
5 |
ttctcaacaccgggtgcagataccattagcattgtcaacagctttgcaa |
53 |
Q |
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| T |
11150013 |
ttctcaacatctggttcagataccattagcattgtcaacaaatttgcaa |
11150061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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