View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18658_high_2 (Length: 448)
Name: NF18658_high_2
Description: NF18658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18658_high_2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 30292234 - 30291804
Alignment:
| Q |
1 |
ctctcaacatcttgagctgatccagggaatgctacctctttcactggtctctctatttggcttatcacattgtcctcctcaccttcaaatttccaatcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30292234 |
ctctcaacatcttgagctgatccagggaatgctagctctttcactggtctctgaatttggcttatcacattgtcctcctcaccttcaaatttccaatcac |
30292135 |
T |
|
| Q |
101 |
acaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaatgttaacatgtcattnnnnnnnnnnnnttact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30292134 |
acaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattact |
30292035 |
T |
|
| Q |
201 |
aacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtataccagcaagga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30292034 |
aacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtataccagcaagga |
30291935 |
T |
|
| Q |
301 |
agctcctctggttgttctcagcattgataccaaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctgctggaattacataaac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30291934 |
agctcctctggttgttctcagcattgataccaaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctgctggaattacataaac |
30291835 |
T |
|
| Q |
401 |
atcacctggagacaacctagccctgtacctt |
431 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
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|
| T |
30291834 |
atcacctggagtcaacctagccctgtacctt |
30291804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 30304868 - 30304438
Alignment:
| Q |
1 |
ctctcaacatcttgagctgatccagggaatgctacctctttcactggtctctctatttggcttatcacattgtcctcctcaccttcaaatttccaatcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30304868 |
ctctcaacatcttgagctgatccagggaatgctagctctttcactggtctctgaatttggcttatcacattgtcctcctcaccttcaaatttccaatcac |
30304769 |
T |
|
| Q |
101 |
acaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaatgttaacatgtcattnnnnnnnnnnnnttact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
30304768 |
acaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattact |
30304669 |
T |
|
| Q |
201 |
aacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtataccagcaagga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30304668 |
aacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtataccagcaagga |
30304569 |
T |
|
| Q |
301 |
agctcctctggttgttctcagcattgataccaaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctgctggaattacataaac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30304568 |
agctcctctggttgttctcagcattgataccaaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctgctggaattacataaac |
30304469 |
T |
|
| Q |
401 |
atcacctggagacaacctagccctgtacctt |
431 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
30304468 |
atcacctggagtcaacctagccctgtacctt |
30304438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 30287200 - 30286770
Alignment:
| Q |
1 |
ctctcaacatcttgagctgatccagggaatgctacctctttcactggtctctctatttggcttatcacattgtcctcctcaccttcaaatttccaatcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287200 |
ctctcaacatcttgagctgatccagggaatgctacctctttcactggtctctctatttggcttatcacattgtcctcctcaccttcaaatttccaatcac |
30287101 |
T |
|
| Q |
101 |
acaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaatgttaacatgtcattnnnnnnnnnnnnttact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
30287100 |
acaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattact |
30287001 |
T |
|
| Q |
201 |
aacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtataccagcaagga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287000 |
aacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtataccagcaagga |
30286901 |
T |
|
| Q |
301 |
agctcctctggttgttctcagcattgataccaaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctgctggaattacataaac |
400 |
Q |
| |
|
|| |||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| |||||| |||||||||||||| |
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|
| T |
30286900 |
agttcctttgattgttctccgcattgataccaaatccaagcaaagagagatccgaagaagcagttacgacaattggatgacctgccggaattacataaac |
30286801 |
T |
|
| Q |
401 |
atcacctggagacaacctagccctgtacctt |
431 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |
|
|
| T |
30286800 |
atcacctggagacaacctagccctatacctt |
30286770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 137 - 431
Target Start/End: Complemental strand, 30315651 - 30315351
Alignment:
| Q |
137 |
ttcaattaagtagaagcaaatcttttaattaatgttaacatgtcattnnnnnnnnnnnnttactaacatatgctacattcaatttaatttaattttggta |
236 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
30315651 |
ttcaattaagtagaaccaaatattttaaataatgttaacatgtcattaaaaataaaaaataactaatataggctacattcaatttaatttaattttggta |
30315552 |
T |
|
| Q |
237 |
ggaaactattgtaattaggccatacagaa----agagactgagtgagaatacagtata--ccagcaaggaagctcctctggttgttctcagcattgatac |
330 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||| ||||||||||| |||||| |||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
30315551 |
gaaaactattgtaattaggccatacagaaggaaagagaccgagtgagaatatagtatataccagcaaggaagttcctctgattgttctcagcattgatac |
30315452 |
T |
|
| Q |
331 |
caaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctgctggaattacataaacatcacctggagacaacctagccctgtacct |
430 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
30315451 |
caaatccaagcaaagagagatccgaggaagcctttacgacaattggatgacctgcgggaattacataaacatcacctggagacaacctagccctatacct |
30315352 |
T |
|
| Q |
431 |
t |
431 |
Q |
| |
|
| |
|
|
| T |
30315351 |
t |
30315351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 30300076 - 30299930
Alignment:
| Q |
1 |
ctctcaacatcttgagctgatccagggaatgctacctctttcactggtctctctatttggcttatcacattgtcctcctcaccttcaaatttccaatcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
30300076 |
ctctcaacatcttgagctgatccagggaatgctacctctttcactggtctctctatttggcttatcacattgtcttcctcaccttcaaatttgaaatcac |
30299977 |
T |
|
| Q |
101 |
acaaaaaataaacatatcttaattagctttttcttattcaattaagta |
148 |
Q |
| |
|
||| |||||||||||||||||||||| |||| || ||||| ||||||| |
|
|
| T |
30299976 |
aca-aaaataaacatatcttaattagattttactcattcatttaagta |
30299930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 289 - 431
Target Start/End: Complemental strand, 30299370 - 30299228
Alignment:
| Q |
289 |
taccagcaaggaagctcctctggttgttctcagcattgataccaaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctgctgg |
388 |
Q |
| |
|
|||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| |||||| |||||| || |
|
|
| T |
30299370 |
tacctgcaaggaagttcctctcgttgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcgctaacgacagttggatgacctgccgg |
30299271 |
T |
|
| Q |
389 |
aattacataaacatcacctggagacaacctagccctgtacctt |
431 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
30299270 |
aattacatacacatcacctggagacaacctagctctgtacctt |
30299228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 30315734 - 30315647
Alignment:
| Q |
1 |
ctctcaacatcttgagctgatccagggaatgctacctctttcactggtctctctatttggcttatcacattgtcctcctcaccttcaa |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30315734 |
ctctcaacatcttgagctgatccagggaatgctacctctttcactggtctctctatttggcttatcacattgtcttcctcaccttcaa |
30315647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 46810522 - 46810441
Alignment:
| Q |
4 |
tcaacatcttgagctgatccagggaatgctacctctttcactggtctctctatttggcttatcacattgtcctcctcacctt |
85 |
Q |
| |
|
||||| |||| ||| |||||||||||||| |||||||| ||||| || |||||||| |||||||||||||| |||||||||| |
|
|
| T |
46810522 |
tcaacctcttcagcagatccagggaatgcaacctcttttactggcctttctatttgacttatcacattgtcatcctcacctt |
46810441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 366
Target Start/End: Complemental strand, 46810335 - 46810254
Alignment:
| Q |
285 |
agtataccagcaaggaagctcctctggttgttctcagcattgataccaaatccaagcaaagagagatccgacgaagctttta |
366 |
Q |
| |
|
|||||||| ||||| ||| | ||||| ||||||||||||||||||||||| ||||| ||| ||||| ||| ||||| |||| |
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|
| T |
46810335 |
agtatacctgcaagaaagtttctctgattgttctcagcattgataccaaagccaaggaaattgagattcgaggaagcattta |
46810254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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