View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18658_high_3 (Length: 441)
Name: NF18658_high_3
Description: NF18658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18658_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 142 - 427
Target Start/End: Original strand, 32679640 - 32679925
Alignment:
| Q |
142 |
aggtttagaagtcaggtacaaccataaaggatgaaaaggtttagaagtcaggtacaacccacaaaggatgaaaaccaacaatacttgtttgttatctcaa |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32679640 |
aggtttagaagtcaggtacaaccataaaggatgaaaaggtttagaagtcaggtacaacccataaaggatgaaaaccaacaatacttgtttgttatcttaa |
32679739 |
T |
|
| Q |
242 |
atatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacag |
341 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32679740 |
atatcatgtaaaacacatcctaacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacag |
32679839 |
T |
|
| Q |
342 |
ttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttggtaatgatcaaactcctcatcttcat |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32679840 |
ttcaaataatgagcggaattataataccttatatacaagtagtgcagcgagttgcctttggtaatgatcaaactcctcgtcttcat |
32679925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 32679630 - 32679676
Alignment:
| Q |
168 |
aaggatgaaaaggtttagaagtcaggtacaacccacaaaggatgaaaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
32679630 |
aaggatgaaaaggtttagaagtcaggtacaa-ccataaaggatgaaaa |
32679676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 232 - 425
Target Start/End: Complemental strand, 44806795 - 44806603
Alignment:
| Q |
232 |
gttatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaa |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||||| |||||||||||||| ||||||||| |
|
|
| T |
44806795 |
gttatctcaaatatcatgtaaaacacatcataacagcttagctacttgacgaaagagactccgtatgtgcaaaaacagcatcgcacagttatcaatagaa |
44806696 |
T |
|
| Q |
332 |
cacatgacagttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttggtaatgatcaaactcctcatcttc |
425 |
Q |
| |
|
|| ||||| |||||||||||||| ||| || | |||||| ||||||||| ||| || ||||||||||| | |||||||||||||||||||| |
|
|
| T |
44806695 |
catgtgacaattcaaataatgagcagaa-tacactacctttgatacaagtaatgcggcaagttgcctttgatgctgatcaaactcctcatcttc |
44806603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 44807003 - 44806913
Alignment:
| Q |
5 |
ggcataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaatcagatgccaaaacacaaacca |
95 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||| || |||||||||| | |||| |||||||| |
|
|
| T |
44807003 |
ggcataggatagtgagtcattcaactcgcccaagtaataaaagacctaagataaaggagcgaagaaaaatcagatactaaaatacaaacca |
44806913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 44806873 - 44806806
Alignment:
| Q |
110 |
tggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaaa |
177 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| |||||||||| | ||||||| || |||| |||||| |
|
|
| T |
44806873 |
tggatatgaaaaaacttaagtcctctggtgattggtttagaagccgggtacaatcaaaaagaatgaaa |
44806806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 204 - 413
Target Start/End: Original strand, 28136025 - 28136230
Alignment:
| Q |
204 |
aaaggatgaaaaccaacaatacttgtttgttatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgc-a |
302 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
28136025 |
aaaggatgaaagccaacaatacttatttgttatctcaaatatcatgtaaaacacatcataac-----agctacatgaagaaagagactccatatatgcaa |
28136119 |
T |
|
| Q |
303 |
aaaatagcatcgcacagttttcaatagaacacatgacagttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttgg |
402 |
Q |
| |
|
|||| ||||||||| ||| |||||||||| |||||||||||||||||||| ||| ||| |||||| |||| |||||||| || |||||||||||| |
|
|
| T |
28136120 |
aaaacagcatcgcatagtcaccaatagaacatgtgacagttcaaataatgagcagaacaatactaccttggatacgagtagtgcggcaagttgcctttgg |
28136219 |
T |
|
| Q |
403 |
taatgatcaaa |
413 |
Q |
| |
|
| |||||||| |
|
|
| T |
28136220 |
tgctgatcaaa |
28136230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 28135839 - 28135930
Alignment:
| Q |
5 |
ggcataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaatcagat-gccaaaacacaaacca |
95 |
Q |
| |
|
||||||||||| ||| ||||||||||| |||||||||||||| ||||||||| ||||||| ||| ||||| |||| | ||||||||||||| |
|
|
| T |
28135839 |
ggcataggatagtgagtcattcagctcacccaagtaataaaatacctaagataaaggagcgaaaaaaaattagatagtaaaaacacaaacca |
28135930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 28135955 - 28136035
Alignment:
| Q |
97 |
gaataataatatgtggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaaa |
177 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| ||| |||||| |||||||||| | ||||||| | ||||||||||| |
|
|
| T |
28135955 |
gaataataatatagggatatgaaaaaacataaggactctggtgattggtttagaagccgggtacaataaaaaaggatgaaa |
28136035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 179 - 345
Target Start/End: Complemental strand, 2230609 - 2230444
Alignment:
| Q |
179 |
ggtttagaagtcaggtacaacccacaaaggatgaaaaccaacaatacttgtttgttatctcaaatatcatgtaaaacacatcataacagcttagctacat |
278 |
Q |
| |
|
|||||||||| ||||||||| | | |||||||||| || | |||| || |||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2230609 |
ggtttagaagccaggtacaatcaa-aaaggatgaaggccgaaaatatttatttgctatctcaaatatcatgtaaaacacatcataacagcttagccacat |
2230511 |
T |
|
| Q |
279 |
gaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacagttca |
345 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| | ||| ||||||||||| |||||||||| |
|
|
| T |
2230510 |
gaagaaagagactccatatatgcaaaaacagcatcgctcggttatcaatagaacatgtgacagttca |
2230444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 2230655 - 2230576
Alignment:
| Q |
97 |
gaataataatatgtggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaa |
176 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||| |||||| |||||||||| ||||||||| || |||||||||| |
|
|
| T |
2230655 |
gaataataatatatggatataaaaaaacttaaggcctctggtgattggtttagaagccaggtacaatcaaaaaggatgaa |
2230576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 2230772 - 2230704
Alignment:
| Q |
5 |
ggcataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaa |
73 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||||| ||| |||| |
|
|
| T |
2230772 |
ggcataggatagtgagtcattcagctcgcccaagtaattaaagacctaagataaaggagcgaaaaaaaa |
2230704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University