View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18658_high_6 (Length: 331)
Name: NF18658_high_6
Description: NF18658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18658_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 43056165 - 43056480
Alignment:
| Q |
1 |
gatgccttagacaacctgattgttgaagtcattcacgccgaagctgccctaagagtcgtgactgaaaacgcacaacttttaatatttccttccaccttgc |
100 |
Q |
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| T |
43056165 |
gatgccttagacaacctgattgttgaagtcattcacgccgaagctgccctaagagtcgtgactgaaaacgcacaacttttaatatttccttccaccttgc |
43056264 |
T |
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| Q |
101 |
ttccaatccaacatcagagtgagtttcaactattctatctcttttgttgaatatttcagtcaaattatttatacatcttatcttaagattacattttaac |
200 |
Q |
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| T |
43056265 |
ttccaatccaacatcagagtgagtttcaactattctatctcttttgttgaatatttcagtcaaactatttatacatcttatcttaagattaaattttaac |
43056364 |
T |
|
| Q |
201 |
ttgagttatcttttggacagaatttgattctaagaattacttgtggggtgtcttcagaaaaaagcaaacttcaaatgagacaaattatgttgtgactgcg |
300 |
Q |
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| T |
43056365 |
ttgagttatcttttggacagaatttgattctaagaattacttgtggggtgtcttcagaaaaaagcaaacttcaaatgagacaaattatgttgtgactcag |
43056464 |
T |
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| Q |
301 |
tgttgattctaagtat |
316 |
Q |
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| T |
43056465 |
tgttgattctaagtat |
43056480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 40 - 285
Target Start/End: Original strand, 44806038 - 44806277
Alignment:
| Q |
40 |
gaagctgccctaagagtcgtgactgaaaacgcacaacttttaatatttccttccaccttgcttccaatccaacatcagagtgagtttcaactattctatc |
139 |
Q |
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| T |
44806038 |
gaagctgccgtaagagttgtaactgaaaatgcagtgcttttaatttttccttctgacttgcttccaatccgacatcagagtgagcttcatctattccagc |
44806137 |
T |
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| Q |
140 |
tcttttgttgaatatttcagtcaaattatttatacatcttatcttaagattacattttaacttgagttatcttttggacagaatttgattctaagaatta |
239 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||| |||||||||||||| | | ||| |||| |
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| T |
44806138 |
tcttcagttgaatatttcagtcaaattatttatacatctt------agattacgttttaatttgagttatcctttggacagaatttcaaaccaagtatta |
44806231 |
T |
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| Q |
240 |
cttgtggggtgtcttcagaaaaaagcaaacttcaaatgagacaaat |
285 |
Q |
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||||||||||||||||| |||||||||||||||| | ||||||||| |
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| T |
44806232 |
cttgtggggtgtcttcaaaaaaaagcaaacttcacacgagacaaat |
44806277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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