View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18658_low_4 (Length: 398)
Name: NF18658_low_4
Description: NF18658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18658_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 3 - 277
Target Start/End: Original strand, 8402721 - 8402995
Alignment:
| Q |
3 |
aaaatacatagagatatatgcgaagcgttcatgaccaacaaataccaaggtccaagggaagagtaatagaatcaattctttccggagcataaagctgcaa |
102 |
Q |
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| T |
8402721 |
aaaatacatagagatatatgcgaagcgttcatgaccaacaaataccaaggtccaagggaagagtaatagaatcaattctttctggagcataaagctgcaa |
8402820 |
T |
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| Q |
103 |
aacttacaatgttatacaaattacattttattctcacccctagccccaactaagaagaaaagcatnnnnnnntgtgaaatagtaccaatgaatcattcat |
202 |
Q |
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| T |
8402821 |
aacttacaatgttatacaaattacattttattctcacccctagccccaactaagaagaaaagcataaaaaaatgtgaaatagtaccaatgaatcattcat |
8402920 |
T |
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| Q |
203 |
actaaaaactcaaaatgtaaattcatgcatgtatatataggtttggaaacatatgttaaatgggaaagcaactag |
277 |
Q |
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| T |
8402921 |
actaaaaactcaaaatgtaaattcatgcatgtatatataggtttggaaacatatgttaaatgggaaagcaactag |
8402995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 305 - 398
Target Start/End: Original strand, 8403006 - 8403099
Alignment:
| Q |
305 |
gtaattagagaatgggattaggattgtttaaggcgtttttctgttgtactactaaccgagacattcccattgtctcctcttcggagtcctctcc |
398 |
Q |
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| T |
8403006 |
gtaattagagaatgggattaggattgtttaaggcgtttttctgttgtactacaaaccgagacattcccattgtctcctcttcggagtcctctcc |
8403099 |
T |
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