View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18658_low_5 (Length: 392)
Name: NF18658_low_5
Description: NF18658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18658_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 32769632 - 32769267
Alignment:
| Q |
18 |
cctcttacagttgagtttccaggttgttctttttcggacctaacaaactctgctggaattgtttcattcgataatgaagctacattttgcactctttgtg |
117 |
Q |
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| T |
32769632 |
cctctaacagttgagtttccaggttgttctttttcggacctaacaaactctgctggaattgtttcattcgataatgaagctacattttgcactctttgtg |
32769533 |
T |
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| Q |
118 |
tcttttccattattccttttgtgtgttaaactaatcaaatgtaaacttttcaaatctatatatacctctagtagtttaattaaagaagttgcttatatag |
217 |
Q |
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| T |
32769532 |
tcttttccattattccttttgtgtgttaaactaatcaaatgtaaacttttcaaatctatatatacctctagtaatttaattaaagaagttgcttatatag |
32769433 |
T |
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| Q |
218 |
ttttaactnnnnnnnngaagttgcttatatagtattttattaaaggtctcaaatatgtagagttctaattagttagtgggtaaaattaatcatgggaaaa |
317 |
Q |
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| T |
32769432 |
ttttaactaaaaaaaagaagttgcttatatagtattttattaaaggtctcaaatatgtagatttctaattagttagtgggtaaaattaatcatgggaaac |
32769333 |
T |
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| Q |
318 |
tgatggcgtgcttgcttgcatgaagcggaagatttttctccgtgaaaacgggtgaatacatctcat |
383 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32769332 |
tgatggtgtgcttacttgcatgaagcggaagatttttctccgtgaaagcgggtgaatacatctcat |
32769267 |
T |
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