View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18658_low_6 (Length: 353)
Name: NF18658_low_6
Description: NF18658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18658_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 47713810 - 47713476
Alignment:
| Q |
1 |
aaaacttccatcgatcaaatggtaacaaatttcaacacccttcatacaaaccaaaacccaccaatgactttaacagaaaacatgtcaccaacatatctca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47713810 |
aaaacttccatcgatcaaatggtaacaaatttcaacacccttcatacaaaccaaaacccaccaatgactctaacagaaaacatgtcaccaacatatctca |
47713711 |
T |
|
| Q |
101 |
ctacttgcaacccatgtcttgacttcttcttccatgttgtccccgacannnnnnnngaaactctcctccgacgacttcaattagcatggtcctataaccc |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47713710 |
ctactggcaacccatgtcttgacttcttcttccatgttgtccccgacactccccctgaaactctcctccgacgacttcaattagcatggtcctataaccc |
47713611 |
T |
|
| Q |
201 |
actcaccacccttaaactcgtctgtaacctccgcggcgtccgcggtaccggcaagtccgatcgtgaaggtttctacgccgctgctctttggtttcaccac |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47713610 |
actcaccacccttaaactcgtctgtaacctccgcggcgttcgcggtaccggcaagtccgatcgtgaaggtttctacgccgctgctctttggtttcaccac |
47713511 |
T |
|
| Q |
301 |
tgccaccctaaaaccctagcttctaacgtcccttc |
335 |
Q |
| |
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| ||||||||||||||||||||||||||||||||| |
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| T |
47713510 |
taccaccctaaaaccctagcttctaacgtcccttc |
47713476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 182 - 293
Target Start/End: Complemental strand, 15835815 - 15835704
Alignment:
| Q |
182 |
tagcatggtcctataacccactcaccacccttaaactcgtctgtaacctccgcggcgtccgcggtaccggcaagtccgatcgtgaaggtttctacgccgc |
281 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||| || || || ||||||||||||||| || ||||| |||||||| || |
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| T |
15835815 |
tagcatggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgctgc |
15835716 |
T |
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| Q |
282 |
tgctctttggtt |
293 |
Q |
| |
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|||||| ||||| |
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| T |
15835715 |
tgctctctggtt |
15835704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 15835918 - 15835851
Alignment:
| Q |
79 |
aacatgtcaccaacatatctcactacttgcaacccatgtcttgacttcttcttccatgttgtccccga |
146 |
Q |
| |
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||||||||||| |||| |||| | || | |||||||| ||||| ||||||||||||||||||||||| |
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| T |
15835918 |
aacatgtcaccgacatttctctccaccggtaacccatgccttgatttcttcttccatgttgtccccga |
15835851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 187 - 321
Target Start/End: Complemental strand, 19796572 - 19796438
Alignment:
| Q |
187 |
tggtcctataacccactcaccacccttaaactcgtctgtaacctccgcggcgtccgcggtaccggcaagtccgatcgtgaaggtttctacgccgctgctc |
286 |
Q |
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|||||| | ||||| |||||| |||| |||||||||||||||||||| ||||||||||||||||| |||||| | ||||| ||||||||||| |||| |
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| T |
19796572 |
tggtcccaaaaccctctcaccgccctcaaactcgtctgtaacctccgtggcgtccgcggtaccggaaagtccaacaaagaaggcttctacgccgccgctc |
19796473 |
T |
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| Q |
287 |
tttggtttcaccactgccaccctaaaaccctagct |
321 |
Q |
| |
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| |||||||| | |||||||||||||||||| |
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| T |
19796472 |
tctggtttcatgaaaatcaccctaaaaccctagct |
19796438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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