View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18658_low_8 (Length: 295)
Name: NF18658_low_8
Description: NF18658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18658_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 40819443 - 40819724
Alignment:
| Q |
1 |
aatcgctctggctaaattatgaacgatatattagattgtctatggataaaagctagagcaaaactagcaatagtggaaagagaaggcctgcagctagaaa |
100 |
Q |
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| T |
40819443 |
aatcgctcttgctaaattatgaacgatctattagattgtttatggataaaagctagagcaaaactagcaatagtggaaagagaaggcctgcaagtagaaa |
40819542 |
T |
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| Q |
101 |
ctaaagtaccaagttcattctcatgattacaaccattaagcattgcattaacaacaaattgagtttaacacgttctaaactcatgtacggaagctattga |
200 |
Q |
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| T |
40819543 |
ctaaagtaccaagttcattctcatgattacaaccattaagcattgcattaacaacaaattgagtttaacacgttctaaactcatgtacggaagctattga |
40819642 |
T |
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| Q |
201 |
at-gctaattggagagcagtaacatcgcattcaatcacatggctaacagaagagaagagcattaatcgcgcttggacaaaag |
281 |
Q |
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| T |
40819643 |
atggctaattggagagcagtaacctcacattcaatcacatggctaacggaagagaagagcattaatcgcacttggacaaaag |
40819724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 33492254 - 33492299
Alignment:
| Q |
97 |
gaaactaaagtaccaagttcattctcatgattacaaccattaagca |
142 |
Q |
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| T |
33492254 |
gaaactaaagtaccaagttcattctgataagtacagccattaagca |
33492299 |
T |
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