View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18659_high_12 (Length: 319)
Name: NF18659_high_12
Description: NF18659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18659_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 48445625 - 48445917
Alignment:
| Q |
18 |
tatatatggttttcctattctcgaagatttgaatacaaaatcatttctattaagttcgccggagttgtttgatgatccaacagtaaagttgaatgcttta |
117 |
Q |
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| T |
48445625 |
tatatacggttttcctattctagaagatttgaatacaaaatcatttctattaagttcgccggagttgtttgatgatccagcagtaaagttgaatgcttta |
48445724 |
T |
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| Q |
118 |
cttaatttggccaaagtaaggatttgttatggtatggatgatatgatgactttgttttgcaaggcaaagattttgcatctagaacaggtatgaatatctc |
217 |
Q |
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| T |
48445725 |
cttaatttggccaaagtaaggatttgttatggtatggatgatatgatgactttgttttgcaaggcaaagattttgcatctagaacaggtatgaatatctc |
48445824 |
T |
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| Q |
218 |
tcctgtcaaattatttttgccagtttcatattatta-nnnnnnnnnnnnncaaaacaatgtgttttagaaatttaagatataattgacctttg |
309 |
Q |
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| T |
48445825 |
tcctgtcaaattatttttgccagtttcatattattattttttttctttttcaaaacaatgtgttttagaaatttaagatataattgacctttg |
48445917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 213
Target Start/End: Complemental strand, 7175678 - 7175571
Alignment:
| Q |
106 |
ttgaatgctttacttaatttggccaaagtaaggatttgttatggtatggatgatatgatgactttgttttgcaaggcaaagattttgcatctagaacagg |
205 |
Q |
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| T |
7175678 |
ttgaatgctttacctaatttggtgaaagtaagtatttgccatgatatggatactttgatgactttggtttgtaaggcaaagattatgcatgtagaaaagg |
7175579 |
T |
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| Q |
206 |
tatgaata |
213 |
Q |
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| T |
7175578 |
tatgaata |
7175571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 43098760 - 43098801
Alignment:
| Q |
106 |
ttgaatgctttacttaatttggccaaagtaaggatttgttat |
147 |
Q |
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| T |
43098760 |
ttgaatgctttacctaatttggtcaaagtaaggattcgttat |
43098801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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