View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18659_high_14 (Length: 310)
Name: NF18659_high_14
Description: NF18659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18659_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 30418677 - 30418571
Alignment:
| Q |
100 |
gagatcattttgattacctaatgtaatctattgttgattgtgaggatgcatttcttatattttagcaagcttaactaagcgttttaataggatatcataa |
199 |
Q |
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| T |
30418677 |
gagatcattttgattacctaatgtaatctattggtgattgtgaggatgcatttcttatattttagcaagcttaactaagcgttttaataggatatcataa |
30418578 |
T |
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| Q |
200 |
gtgccta |
206 |
Q |
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||||||| |
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| T |
30418577 |
gtgccta |
30418571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 207 - 310
Target Start/End: Complemental strand, 30418367 - 30418264
Alignment:
| Q |
207 |
atcaaatgagcttataagatgtaagctataagctatagattcaaaaatgtgtcttgccaaacggactctatgtataacttatttctgtaacaaatagata |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30418367 |
atcaaatgagcttataagatgtaagctataagctatagattcaaaaatgtgtcttgccaaacggactctatgtataacttatttctgtaacaaacagata |
30418268 |
T |
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| Q |
307 |
aaat |
310 |
Q |
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|||| |
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| T |
30418267 |
aaat |
30418264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 30418782 - 30418700
Alignment:
| Q |
18 |
ggatcttggagcaaaaacgttggttgcgctgtaagtattcttttttattcttatttttaatgttgttaggaaataggattagg |
100 |
Q |
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| T |
30418782 |
ggatcttggagcaaaaacgttggttgcgctgtaagtattcttttttattcttatttttaatgttgttaggaaataggattagg |
30418700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 17489914 - 17489946
Alignment:
| Q |
208 |
tcaaatgagcttataagatgtaagctataagct |
240 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
17489914 |
tcaaatgagcttataagatataagctataagct |
17489946 |
T |
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