View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18659_high_15 (Length: 303)

Name: NF18659_high_15
Description: NF18659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18659_high_15
NF18659_high_15
[»] chr5 (1 HSPs)
chr5 (1-293)||(9973264-9973556)


Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 9973556 - 9973264
Alignment:
Q  1 gcaaagttcttcccctagagttggacattgttgcattcacaagaattggatttgaacagaaaccactagctaagctcaaaaatatttagaccatctcatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9973556 gcaaagttcttcccctagagttggacattgttgcattcacaagaattggatttgaacagaaaccactagctaagctcaaaaatatttagaccatctcatc 9973457  T
Q  101 caaacattttgagttttctgaaccatatttctacaaacttaatgaaagactataatgacaaatttaagaagaaaacaaaacttctgcaaactactcctgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9973456 caaacattttgagttttctgaaccatatttctacaaacttaatgaaagactataatgacaaatttaagaagaaaacaaaacttctgcaaactactcctgt 9973357  T
Q  201 gtatacatacaataaaatgtcttgtaatcatacacagccaacaaaaaactgtgactgcagaatatttctctaaatctagccagacccttcttc 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9973356 gtatacatacaataaaatgtcttgtaatcatacacagccaacaaaaaactgtgactgcagaatatttctctaaatctagccagacccttcttc 9973264  T

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