View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18659_high_16 (Length: 280)

Name: NF18659_high_16
Description: NF18659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18659_high_16
NF18659_high_16
[»] chr3 (6 HSPs)
chr3 (22-272)||(8152844-8153094)
chr3 (159-272)||(49786397-49786508)
chr3 (155-256)||(47940826-47940925)
chr3 (155-272)||(8436880-8436995)
chr3 (155-272)||(29836754-29836868)
chr3 (161-256)||(48778973-48779066)
[»] chr1 (5 HSPs)
chr1 (155-272)||(20186825-20186940)
chr1 (154-272)||(30339635-30339751)
chr1 (155-272)||(51787272-51787387)
chr1 (161-272)||(9672956-9673062)
chr1 (191-256)||(43740407-43740472)
[»] chr7 (10 HSPs)
chr7 (155-272)||(496683-496798)
chr7 (155-272)||(11765707-11765822)
chr7 (155-256)||(2286458-2286557)
chr7 (155-272)||(48057683-48057798)
chr7 (155-256)||(31427260-31427361)
chr7 (154-272)||(42535198-42535314)
chr7 (155-256)||(25185933-25186032)
chr7 (183-272)||(7527248-7527337)
chr7 (162-256)||(23844642-23844734)
chr7 (182-272)||(40855135-40855226)
[»] chr5 (5 HSPs)
chr5 (155-256)||(25955960-25956059)
chr5 (156-272)||(38280257-38280371)
chr5 (155-272)||(1501353-1501468)
chr5 (155-256)||(42250116-42250215)
chr5 (155-265)||(7886355-7886463)
[»] chr2 (2 HSPs)
chr2 (155-272)||(13922185-13922300)
chr2 (158-272)||(11828960-11829072)
[»] chr8 (2 HSPs)
chr8 (152-256)||(4076944-4077046)
chr8 (160-272)||(3780343-3780453)
[»] chr4 (3 HSPs)
chr4 (155-256)||(52055148-52055247)
chr4 (189-272)||(1158239-1158322)
chr4 (183-265)||(49866676-49866758)
[»] chr6 (1 HSPs)
chr6 (146-256)||(33594519-33594627)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 272
Target Start/End: Original strand, 8152844 - 8153094
Alignment:
Q  22 acaaagtaatacatactccgactatggttataggacccttcatgaaatatttttccactagtgttagtagggactaatattctcacgtgcctttgagaat 121  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8152844 acaaagtaatacatactccgactacggttataggacccttcatgaaatatttttccactagtgttagtagggactaatattctcacgtgcctttgagaat 8152943  T
Q  122 gttaaacctaatcaaacgataggaattttcaacgagtggtgatac--atgcacacccataggtgtggcatacacacctaaacctccacataaacatgtga 219  Q
    |||||||||||||| |||||||||||||  |||||||||||||||  ||||||||| ||||  |||||||||||||||||||||||||||||||||||||    
T  8152944 gttaaacctaatcatacgataggaatttctaacgagtggtgatacatatgcacacctatag--gtggcatacacacctaaacctccacataaacatgtga 8153041  T
Q  220 catgtggcctagatcccacaaacattttgtctctcttatctttcattcatctc 272  Q
    |||||||||||||  ||||||||| |||||||||||| ||||| || ||||||    
T  8153042 catgtggcctagactccacaaacactttgtctctcttctcttttatccatctc 8153094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 159 - 272
Target Start/End: Original strand, 49786397 - 49786508
Alignment:
Q  159 ggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctcttat 258  Q
    ||||||||||| |||||||||||||  |||||||||| ||||||||||||||||||||||||| ||| |||||| |||||||||| |||||||||||| |    
T  49786397 ggtgatacatgtacacccataggtg--gcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttct 49786494  T
Q  259 ctttcattcatctc 272  Q
    ||||||||||||||    
T  49786495 ctttcattcatctc 49786508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 47940826 - 47940925
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    |||| |||||||||||||||| || ||||  |||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||    
T  47940826 gagtagtgatacatgcacacctattggtg--gcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctc 47940923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 8436995 - 8436880
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    ||||||||||| ||| |||||||||||||  |||||||||  |||||||| ||||||| || ||||| ||| | |||| |||||||||| ||||||||||    
T  8436995 gagtggtgatatatgtacacccataggtg--gcatacacatttaaacctctacataaatatatgacacgtgtcttagaccccacaaacactttgtctctc 8436898  T
Q  255 ttatctttcattcatctc 272  Q
    || |||||||| ||||||    
T  8436897 ttctctttcatccatctc 8436880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 29836868 - 29836754
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    |||||||||||||||||||| ||||||||  |||||||||| |||||||||||| ||| |||| |||| || |||| | |||||||| | ||||||||||    
T  29836868 gagtggtgatacatgcacactcataggtg--gcatacacacttaaacctccacacaaatatgtaacatatgacctacaccccacaaa-actttgtctctc 29836772  T
Q  255 ttatctttcattcatctc 272  Q
    || ||| |||||| ||||    
T  29836771 ttctctctcattcgtctc 29836754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 256
Target Start/End: Complemental strand, 48779066 - 48778973
Alignment:
Q  161 tgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctctt 256  Q
    ||||||||||||||| |||||||  |||||| ||  ||||| |||||||||| ||||||||||||| |||||  ||| ||||| ||| ||||||||    
T  48779066 tgatacatgcacacctataggtg--gcatactcatttaaacatccacataaatatgtgacatgtggtctagactccataaacactttatctctctt 48778973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 20186940 - 20186825
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    ||||||||||||||| |||||||||||||  |||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  20186940 gagtggtgatacatgtacacccataggtg--gcatacacacttaaacctccacataaacatgtgacacgtgtcctagatcccacaaacactttgtctctc 20186843  T
Q  255 ttatctttcattcatctc 272  Q
    || |||||||| ||||||    
T  20186842 ttctctttcatccatctc 20186825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 154 - 272
Target Start/End: Original strand, 30339635 - 30339751
Alignment:
Q  154 cgagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctct 253  Q
    |||||||||||||||| |||||||||||||  |||||||||| |||||||| |||||||||||||||| ||| |||||| |||||||||| |||||||||    
T  30339635 cgagtggtgatacatgtacacccataggtg--gcatacacacttaaacctctacataaacatgtgacacgtgtcctagaccccacaaacactttgtctct 30339732  T
Q  254 cttatctttcattcatctc 272  Q
    ||| |||||||| ||||||    
T  30339733 cttctctttcatccatctc 30339751  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 272
Target Start/End: Original strand, 51787272 - 51787387
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    ||||||||||||||| ||| |||||||||  |||||||||| ||||||| ||||||||||||||||| |||  ||||| |||||||||| ||||||||||    
T  51787272 gagtggtgatacatgtacatccataggtg--gcatacacacttaaaccttcacataaacatgtgacacgtgctctagaccccacaaacactttgtctctc 51787369  T
Q  255 ttatctttcattcatctc 272  Q
    || |||||||| ||||||    
T  51787370 ttctctttcatgcatctc 51787387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 9673062 - 9672956
Alignment:
Q  161 tgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctcttatct 260  Q
    ||||||||| ||||| |||||||  |||||||||| ||||||||||||||||||||||||| ||| ||||||| |||||||||   |||||||||| |||    
T  9673062 tgatacatgtacacctataggtg--gcatacacacttaaacctccacataaacatgtgacacgtgtcctagat-ccacaaaca--ctgtctctcttctct 9672968  T
Q  261 ttcattcatctc 272  Q
    ||||| ||||||    
T  9672967 ttcatccatctc 9672956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 43740472 - 43740407
Alignment:
Q  191 cacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctctt 256  Q
    ||||| |||||||||||| |||||||||| |||||||||| | | |||||||| ||||||||||||    
T  43740472 cacacttaaacctccacacaaacatgtgatatgtggcctaaacctcacaaacactttgtctctctt 43740407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 155 - 272
Target Start/End: Original strand, 496683 - 496798
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    ||||||||||||||| ||| |||||||||  |||||||||| ||||||||||||||||||| ||||| ||| |||||| |||||||||| ||||||||||    
T  496683 gagtggtgatacatgtacatccataggtg--gcatacacacttaaacctccacataaacatatgacacgtgtcctagaccccacaaacactttgtctctc 496780  T
Q  255 ttatctttcattcatctc 272  Q
    || |||||||| ||||||    
T  496781 ttctctttcatccatctc 496798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 155 - 272
Target Start/End: Original strand, 11765707 - 11765822
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    ||||||||||||||| ||| |||||||||  |||||||||| ||||||||||||||||||||||||| ||| ||| || |||||||||| ||||||||||    
T  11765707 gagtggtgatacatgtacatccataggtg--gcatacacacttaaacctccacataaacatgtgacacgtgtccttgaccccacaaacactttgtctctc 11765804  T
Q  255 ttatctttcattcatctc 272  Q
    || |||||||| ||||||    
T  11765805 ttctctttcatccatctc 11765822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 2286458 - 2286557
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    |||| |||||||||||||||| || ||||  |||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||    
T  2286458 gagtagtgatacatgcacacctattggtg--gcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctc 2286555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 48057798 - 48057683
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    ||||||||||||||| |||||||||||||  ||||||| |  ||||| ||||||||||||||||||| ||| |||||| |||||||||| ||||||||||    
T  48057798 gagtggtgatacatgtacacccataggtg--gcatacatatttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctc 48057701  T
Q  255 ttatctttcattcatctc 272  Q
    || |||||||| ||||||    
T  48057700 ttctctttcatccatctc 48057683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 256
Target Start/End: Complemental strand, 31427361 - 31427260
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    ||||||||||||||||||| |||||||||||||||||| |  ||||||||| |||||| |||||||||||||  ||||  ||||||||| ||||||||||    
T  31427361 gagtggtgatacatgcacatccataggtgtggcatacataattaaacctccgcataaatatgtgacatgtggtttagactccacaaacactttgtctctc 31427262  T
Q  255 tt 256  Q
    ||    
T  31427261 tt 31427260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 272
Target Start/End: Complemental strand, 42535314 - 42535198
Alignment:
Q  154 cgagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctct 253  Q
    |||||| ||||| ||| |||| ||||||||   ||||||||| ||||||||||||||||||||||||| ||| | || |||||||||||| |||||||||    
T  42535314 cgagtgatgatatatgtacactcataggtga--catacacacttaaacctccacataaacatgtgacacgtgtcttatatcccacaaacactttgtctct 42535217  T
Q  254 cttatctttcattcatctc 272  Q
    ||| |||||||| ||||||    
T  42535216 cttctctttcatccatctc 42535198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 256
Target Start/End: Complemental strand, 25186032 - 25185933
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    |||||||||| ||||||||| ||||||||   ||||||||| |||||||||||| ||||||||||||||||||||||| |||||||| | ||| ||||||    
T  25186032 gagtggtgatgcatgcacactcataggtga--catacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaatactttatctctc 25185935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 272
Target Start/End: Complemental strand, 7527337 - 7527248
Alignment:
Q  183 gtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctcttatctttcattcatctc 272  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||  ||| ||||| ||||||||| || | |||||| ||||||    
T  7527337 gtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagactccataaacactttgtctcttttttttttcatccatctc 7527248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 256
Target Start/End: Original strand, 23844642 - 23844734
Alignment:
Q  162 gatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctctt 256  Q
    |||||||||||| ||||||||    |||||||||  ||| |||||||||||||||||||||||| |||||| | |||||||| ||||||||||||    
T  23844642 gatacatgcacatccataggtaa--catacacactcaaatctccacataaacatgtgacatgtgccctagacctcacaaacactttgtctctctt 23844734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 40855226 - 40855135
Alignment:
Q  182 tgtggcatacacacctaaacctccacataaacatgtgacatgtggc-ctagatcccacaaacattttgtctctcttatctttcattcatctc 272  Q
    ||||| ||| |||| |||||||| ||| ||||||||||| |||||  ||||| | |||||||| ||||||||| ||  ||||||||||||||    
T  40855226 tgtggtatatacacttaaacctctacacaaacatgtgacctgtgggtctagacctcacaaacactttgtctcttttccctttcattcatctc 40855135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 155 - 256
Target Start/End: Complemental strand, 25956059 - 25955960
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    |||||||||||||||||||| ||||||||  |||||||||  |||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||    
T  25956059 gagtggtgatacatgcacactcataggtg--gcatacacatttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctc 25955962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 156 - 272
Target Start/End: Complemental strand, 38280371 - 38280257
Alignment:
Q  156 agtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctct 255  Q
    |||||||||||||| ||| |||||||||  | |||||||| ||||||||||||||||||||||||| ||| |||||| |||||||||| |||||||||||    
T  38280371 agtggtgatacatgtacatccataggtg--gtatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctct 38280274  T
Q  256 tatctttcattcatctc 272  Q
    | |||||||| ||||||    
T  38280273 tctctttcatccatctc 38280257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 1501468 - 1501353
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    ||||||||||||||||| | |||||||||   ||||||||| ||||||||||||||||||| |||||||| ||||||| |||| | ||| ||||||||||    
T  1501468 gagtggtgatacatgcagatccataggtga--catacacacttaaacctccacataaacatatgacatgtagcctagaccccatatacactttgtctctc 1501371  T
Q  255 ttatctttcattcatctc 272  Q
    || |||||||| ||||||    
T  1501370 ttctctttcatccatctc 1501353  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 42250116 - 42250215
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    |||||||||||||||||||||||||  ||   |||| |||| |||||||||||| |||||||||||||||||| |||| |||||||||| ||||||||||    
T  42250116 gagtggtgatacatgcacacccataaatga--catagacacttaaacctccacacaaacatgtgacatgtggcttagaccccacaaacactttgtctctc 42250213  T

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Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 265
Target Start/End: Original strand, 7886355 - 7886463
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    |||||||||| |||||| ||  |||||||   ||||||||| |||||||||||| ||||||||||||||||||||| |||||||| | ||||||||||||    
T  7886355 gagtggtgattcatgcatacttataggtga--catacacacttaaacctccacacaaacatgtgacatgtggcctaaatcccacatatattttgtctctc 7886452  T
Q  255 ttatctttcat 265  Q
    ||  |||||||    
T  7886453 ttccctttcat 7886463  T

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Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 155 - 272
Target Start/End: Original strand, 13922185 - 13922300
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    ||||||||||||||| ||| |||||||||  |||||||||| ||||||||||| ||||||||||||| ||| |||||| |||||||||| ||||||||||    
T  13922185 gagtggtgatacatgtacatccataggtg--gcatacacacttaaacctccacgtaaacatgtgacacgtgtcctagaccccacaaacactttgtctctc 13922282  T
Q  255 ttatctttcattcatctc 272  Q
    || |||||||| ||||||    
T  13922283 ttctctttcatccatctc 13922300  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 272
Target Start/End: Original strand, 11828960 - 11829072
Alignment:
Q  158 tggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctctta 257  Q
    |||||| |||||||||| ||||||||  |||||||||| |||||||||||||||| |||||||||||| |||||| |||||||||| |||| ||||||      
T  11828960 tggtgagacatgcacactcataggtg--gcatacacacttaaacctccacataaatatgtgacatgtgtcctagaccccacaaacactttgcctctctcc 11829057  T
Q  258 tctttcattcatctc 272  Q
    |||||||| ||||||    
T  11829058 tctttcatccatctc 11829072  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 4077046 - 4076944
Alignment:
Q  152 aacgagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtct 251  Q
    |||||||| ||||||||||| |||||||||||  |||||||||| |||||||||||| ||||||||||||||| ||||||| |||||||||| |||||||    
T  4077046 aacgagtgatgatacatgcatacccataggtg--gcatacacacttaaacctccacacaaacatgtgacatgtagcctagaccccacaaacaatttgtct 4076949  T
Q  252 ctctt 256  Q
    |||||    
T  4076948 ctctt 4076944  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 3780453 - 3780343
Alignment:
Q  160 gtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctcttatc 259  Q
    |||||||||| ||| |||||||||  ||||||||||  ||||||||||| ||||||||||||||| ||||| | || | ||||| ||||||||||||  |    
T  3780453 gtgatacatgtacatccataggtg--gcatacacactcaaacctccacacaaacatgtgacatgtagcctaaacccgagaaacactttgtctctcttccc 3780356  T
Q  260 tttcattcatctc 272  Q
    |||||| ||||||    
T  3780355 tttcatccatctc 3780343  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 256
Target Start/End: Complemental strand, 52055247 - 52055148
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    |||||||||||||||||||  ||||||||  |||||||||| |||||||| ||| ||||||||||||||||||||||| |||||||||| ||||||||||    
T  52055247 gagtggtgatacatgcacattcataggtg--gcatacacacttaaacctctacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctc 52055150  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 1158322 - 1158239
Alignment:
Q  189 tacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctcttatctttcattcatctc 272  Q
    ||||||| |||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||  ||||||||||||||    
T  1158322 tacacacttaaacctccacacaaacatgtgacatgtggcctagaccctacaaacattttgtctctcttccctttcattcatctc 1158239  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 49866676 - 49866758
Alignment:
Q  183 gtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctcttatctttcat 265  Q
    |||| |||||| | ||||||| |||| ||| |||||||||||| | |||| | || ||||| |||||||||||| ||||||||    
T  49866676 gtggtatacacgcttaaaccttcacacaaatatgtgacatgtgacttagaccacataaacactttgtctctcttctctttcat 49866758  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 256
Target Start/End: Complemental strand, 33594627 - 33594519
Alignment:
Q  146 attttcaacgagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacatt 245  Q
    ||||| || |||| |||||||||||||| |||| ||||  |||||||||| ||||||| |||| ||||||||||||||||||||||| |||||||| | |    
T  33594627 attttaaaagagtagtgatacatgcacatccattggtg--gcatacacacttaaaccttcacacaaacatgtgacatgtggcctagaccccacaaatact 33594530  T
Q  246 ttgtctctctt 256  Q
    |||||||||||    
T  33594529 ttgtctctctt 33594519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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