View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18659_high_17 (Length: 278)
Name: NF18659_high_17
Description: NF18659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18659_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 2 - 172
Target Start/End: Complemental strand, 27718519 - 27718349
Alignment:
| Q |
2 |
tcaactttaccatcaaaattgtcatctaaagagacattgtttcgaagttgtaaatcttttatctgaccatggtatctcttccacgaaaacccactccaat |
101 |
Q |
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| T |
27718519 |
tcaactttaccatcaaaattgtcatctaaagagacatcgtttcgaagttgtaaatcttttatctaaccatggcatctcttccacgaaaacccactccaat |
27718420 |
T |
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| Q |
102 |
tgagattaagacatcctctcaagtcaagagattcgagaagagggtatcggtcaagaatagctaccaaccct |
172 |
Q |
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| T |
27718419 |
tgagattaaaacatcctctcaagtcaagagattcgagaagagggcatcggtcaagaatagctaccaaccct |
27718349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 27718346 - 27718288
Alignment:
| Q |
220 |
cattgtttttgcaatagcaaatgcatcatcgtcacatgaatcaccacacacataaattt |
278 |
Q |
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| T |
27718346 |
cattgtttttgcaatagcaaatccatcatcgtcacatgaatcaccacacatataaattt |
27718288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 255
Target Start/End: Original strand, 30621499 - 30621626
Alignment:
| Q |
128 |
agagattcgagaagagggtatcggtcaagaatagctaccaacccttcattggtgagagagtttccattaatcttaagatggcgtaggccttgcattgttt |
227 |
Q |
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| T |
30621499 |
agagattcaagaagagggcatccatcaagaatagcaagcaacccaacttcactgagagggtttccatgaatatcaagatggcgtagcccaggcattgttt |
30621598 |
T |
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| Q |
228 |
ttgcaatagcaaatgcatcatcgtcaca |
255 |
Q |
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| T |
30621599 |
ttgcaataataaatgcctcatcatcaca |
30621626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 250
Target Start/End: Complemental strand, 38285760 - 38285637
Alignment:
| Q |
127 |
aagagattcgagaagagggtatcggtcaagaatagctaccaacccttcattggtgagagagtttccattaatcttaagatggcgtaggccttgcattgtt |
226 |
Q |
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| T |
38285760 |
aagagattcaagaagagggcatccatcaagaatagcaagcaacccatcatcagtgagagggtttttgtgaatatcaagatggcgtagcccaggcattgtc |
38285661 |
T |
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| Q |
227 |
tttgcaatagcaaatgcatcatcg |
250 |
Q |
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| T |
38285660 |
tttgcaataataaatgcctcatcg |
38285637 |
T |
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