View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18659_high_2 (Length: 464)
Name: NF18659_high_2
Description: NF18659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18659_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 42412159 - 42412594
Alignment:
| Q |
19 |
tcaacaggtaatataaatattaaaaacatgccaaattaaaatgaatacatcacctctttcaaaagaataaaactacatatatttctcacaaaattaatta |
118 |
Q |
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| T |
42412159 |
tcaacagataatataaatattaaaaacatgccaaattaaaatgaatacatcacctctttcaaaagaataaaactacatatatttctcacaaaattaatta |
42412258 |
T |
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| Q |
119 |
ttttatttgaatataactaatatacttagcacaccattgaaataaataaactagaactccactttcttattgcagttgattgatttcagaaattgttt-c |
217 |
Q |
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| T |
42412259 |
ttttatttgaatataactaatatacttagcacaccattgaaataaataaactagaactccactttcttattgcagttgattgatttcagaaattgttttc |
42412358 |
T |
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| Q |
218 |
tttggagagtttt-ttatccaatttcataggttgtgttgcccagtacattctgttgctggtctttgccctccacggcaaacaccaacatttgttgggcaa |
316 |
Q |
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| T |
42412359 |
tttggagaatttttttatccaatttcataggttgtgttgcccagtacattctgttgctggtctttgccctccacggcaaacaccaacatttgttgggcaa |
42412458 |
T |
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| Q |
317 |
ttgagacagttgtttgcaaagcttcctttgaaatttgtggatttgtgagttaactccaatggaagatttcccgtaagaaagttgtgatccaaatacaatc |
416 |
Q |
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| T |
42412459 |
ttgagacagttgtttgcaaagcttcctttgaaatttgtggatttgtgagttaactccaatggaagatttcctgtaagaaagttgtgatccaaatacaatc |
42412558 |
T |
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| Q |
417 |
ttctccatgttgttcttagttttaatccatactctt |
452 |
Q |
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| T |
42412559 |
ttctccatgttgttcttagttttaatccatactctt |
42412594 |
T |
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