View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18659_high_21 (Length: 249)
Name: NF18659_high_21
Description: NF18659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18659_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 33044322 - 33044094
Alignment:
| Q |
13 |
caacataatgaaagtggaatgttgatgtttaatctataagataaaaacaaagatttcaaaatatgaaaatagtctagatttcttcaaggcgatatagggt |
112 |
Q |
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| T |
33044322 |
caacataatgaaagtggaatgttgatgtttaatctataagataaaaacaaagatttcaaaatatgaaaatagtctagatttcttcaaggcgatatagggt |
33044223 |
T |
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| Q |
113 |
aaatggattttatcaatggatcaagccatgaaaatagaggttccattgattcaaaatgcacatacgcaacatctgaaaggagtcataggttatattattt |
212 |
Q |
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| T |
33044222 |
aaatggattttatcaatggatcaagtcatgaaaatagaggttccattgattcaaaatgcacatacgcaacatctgaaaggagtcatgggttatattattt |
33044123 |
T |
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| Q |
213 |
tacctcgcctttaaagttttgatattctt |
241 |
Q |
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| T |
33044122 |
tacctcgcctttaaagttttgattttctt |
33044094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 6258382 - 6258317
Alignment:
| Q |
49 |
taagataaaaacaaagatttcaaaatatgaaaatagtctagatttcttcaaggcgatatagggtaa |
114 |
Q |
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| T |
6258382 |
taagataaaacaaaatattttaaaatatgaaaatagcctatatttctttgaagcgatatagggtaa |
6258317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 34883048 - 34883112
Alignment:
| Q |
44 |
atctataagataaaaacaaagatttcaaaatatgaaaatagtctagatttcttcaaggcgatatag |
109 |
Q |
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| T |
34883048 |
atctataagataaaa-caaatatttcaaaacaagaaaataatatagatttctttgaggcgatatag |
34883112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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