View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18659_low_1 (Length: 1077)
Name: NF18659_low_1
Description: NF18659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18659_low_1 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 62 - 505
Target Start/End: Complemental strand, 42325322 - 42324876
Alignment:
| Q |
62 |
tatttatatgcagggttcagagttcaat---cttcgctaaacatatttcaccttgttagatatagtcagagatttgtttaattagtttcatattgtttaa |
158 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42325322 |
tatttatatgcagggttcagagttcaatattcttcgctaaacatatttcaccttgttagatatagtcagagatttgtttaattagtttcatattgtttaa |
42325223 |
T |
|
| Q |
159 |
tctctcacaacatcaaacatccctctctctaacaaactaacaactatcatttgtgctttattggaatggtattgacaaaacctaaatgactgagctaata |
258 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42325222 |
tctctcacaacatcaaacatccatctctctaacaaactaacaactatcatttgtgctttattggaatggtattgacaaaacctaaatgactgagctaata |
42325123 |
T |
|
| Q |
259 |
tatacatatttggttggtgtaggtgatgacagaccctgatgttcctggccccagtgatccttatctaagagaacacttgcactggtaaatataatatata |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42325122 |
tatacatatttggttggtgtaggtgatgacagaccctgatgttcctggccctagtgatccttatctaagagaacacttgcactggtaaatataatatata |
42325023 |
T |
|
| Q |
359 |
atgagatatagtaccatatatctagaaattaaccagttattttgtttgattaaattctgttgtatttatttaatacaggattgtgacagatattcctgga |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42325022 |
atgagatatagtaccatatatctagaaattaaccagttattttgtttgattaaattctgttgtatttatttaatacaggattgtgacagatattcctgga |
42324923 |
T |
|
| Q |
459 |
acaacagatgctacatttggtaggtattttaatggttgaaaaatgcc |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42324922 |
acaacagatgctacatttggtaggtattttaatggttgaaaaatgcc |
42324876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 523 - 567
Target Start/End: Complemental strand, 42324848 - 42324804
Alignment:
| Q |
523 |
gatgagagagaatataatgacatattgaaattgtaaaacacacag |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42324848 |
gatgagagagaatataatgacatattgaaattgtatcacacacag |
42324804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-118
Query Start/End: Original strand, 853 - 1077
Target Start/End: Complemental strand, 50373323 - 50373099
Alignment:
| Q |
853 |
tggttaacgatgaatgtgtacgactggattttctattaaactatctattaggcgctagttagcaagcacacatagtattaggttggattgaagtgtttag |
952 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50373323 |
tggttaacgatgaatgtgtacgactggattttctattaaactatctattaggcgctagttggcaagcacacatagtattaggttggattgaagtgtttag |
50373224 |
T |
|
| Q |
953 |
cttccactaactttctaaaatgtatagatgaccgtaaaaagtagaattagtgtgcagttaagctgttttctctcatcattctgcaaattggattgtggct |
1052 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50373223 |
cttccactaactttctaaaatgtatagatgaccgtaaaaagtagaattagtgtgcagttaagctgttttctctcatcattctgcaaattggattgtggct |
50373124 |
T |
|
| Q |
1053 |
ctcatcattctcacgtttactttgt |
1077 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
50373123 |
ctcatcattctaacgtttactttgt |
50373099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 575 - 829
Target Start/End: Complemental strand, 50373585 - 50373339
Alignment:
| Q |
575 |
gcagaacctgtgtagccgtaaaccagtgac----agtgagtggtgttgggaataggtttgttggagctagattgggaagtgaaaatatgtcgcacatatt |
670 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50373585 |
gcagaccctgtgtagccgtaaaccagtgactgacagtgagtggtgttgggaataggtttgttggagctagattgggaagtgaaaatatgtcgcacatatt |
50373486 |
T |
|
| Q |
671 |
gtgaagctaactcctgtgcacatgcacatgcacatgcttaagcagctttgggatatagtagtggttccaagctccagctcaaattagtcatttatttttt |
770 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50373485 |
gtgaagctaactcctgtgcacatgc------------ttaagcagctttgggatatagtagtggttccaagctccagctcaaattagtcatttatttttt |
50373398 |
T |
|
| Q |
771 |
gtggattctatagggactttatatctctgaactgttcgtttggaatcctctttaactcc |
829 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50373397 |
gtggattctatagggactttatatctctgaactgttcgtttggaatcctctttaactcc |
50373339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 946 - 984
Target Start/End: Original strand, 48272529 - 48272567
Alignment:
| Q |
946 |
tgtttagcttccactaactttctaaaatgtatagatgac |
984 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
48272529 |
tgtttagcttgcactaactttctaaaatgtatagatgac |
48272567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 26206165 - 26206116
Alignment:
| Q |
296 |
gatgttcctggccccagtgatccttatctaagagaacacttgcactggta |
345 |
Q |
| |
|
|||||||||||||| |||||||||||| | | ||||||||| |||||||| |
|
|
| T |
26206165 |
gatgttcctggcccaagtgatccttatatgaaagaacacttacactggta |
26206116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University