View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18659_low_10 (Length: 360)
Name: NF18659_low_10
Description: NF18659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18659_low_10 |
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| [»] scaffold0006 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 13680143 - 13680473
Alignment:
| Q |
18 |
aataataaccggttttcttgacgcattccaacccaaattgttagcaaattctttctaaaagttttaacaccattgggcgaaaacttacactaacagttaa |
117 |
Q |
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| T |
13680143 |
aataataaccggttttcttgacgcattccaacccaaattgttagcaaattctttctaaaagttttaacaccatttggcgaaaacttacactaacagttaa |
13680242 |
T |
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| Q |
118 |
tgtcgcttcatgtccaaacctgagttctaaccagtgattttttcgtattttacctaccgtaattagtatctttgaccacaatagacatcccaaggtatca |
217 |
Q |
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| T |
13680243 |
tgtcgcttcatgtccaaacccgagttttaaccagagattttttcgtattttacctaccgtaattagtatctttgaccacaatagatatcccaaggtatca |
13680342 |
T |
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| Q |
218 |
ccgt-ggctttggcactttgggtctgctatgagactaattttcgagtcgggaacaattcatctagnnnnnnnnngttagagggttttgctacctctcaaa |
316 |
Q |
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| T |
13680343 |
ctgtgggctttggcactttgggtctgctatgagactaattttcgaatcgggagcaattcatctagtttttttttgttagagggtttggctacctctcaaa |
13680442 |
T |
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| Q |
317 |
tgggcgactctaggaatcaaacacactgttc |
347 |
Q |
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| T |
13680443 |
tgggcgactctaggaatcaaacacactgttc |
13680473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 13417580 - 13417911
Alignment:
| Q |
18 |
aataataaccggttttcttgacgcattccaacccaaattgttagcaaattctttctaaaagttttaacaccattgggcgaaaacttacactaacagttaa |
117 |
Q |
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| T |
13417580 |
aataataaccggttttcttgacgcattccaacccaaattgttaggaaattctttctaaaagttttaacaccatttggcgaaaacttacactaacagttaa |
13417679 |
T |
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| Q |
118 |
tgtcgcttcatgtccaaacctgagttctaaccagtgattttttcgtattttacctaccgtaattagtatctttgaccacaatagacatcccaaggtatca |
217 |
Q |
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| T |
13417680 |
tgtcgcttcacgtccaaacccgagttctaacccgagattttttcttattttacctaccgtaattagtatctttgaccacaatagatatcccaaggtatca |
13417779 |
T |
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| Q |
218 |
ccgtggctttggcactttgggtctgctatgagactaattttcgagtcgggaacaattcatctag--nnnnnnnnngttagagggttttgctacctctcaa |
315 |
Q |
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| T |
13417780 |
ccgtggctttggcactttgggtatgctatgagactaattttcgagtcgggaacaattcatctagtttttttctttgttagagggtttggctacctctcaa |
13417879 |
T |
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| Q |
316 |
atgggcgactctaggaatcaaacacactgttc |
347 |
Q |
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| T |
13417880 |
atgggcgattctaggaatcaaacacactgttc |
13417911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 51 - 208
Target Start/End: Original strand, 47978 - 48134
Alignment:
| Q |
51 |
caaattgttagcaaattctttctaaaagttttaacaccattgggcgaaaacttacactaacagttaatgtcgcttcatgtccaaacctgagttctaacca |
150 |
Q |
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||||||||||| ||| ||| ||||||||||||||| ||||| ||||||||| | ||||||||||||| |||| |||||||||||| |||||| |||| |
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| T |
47978 |
caaattgttagtaaaatctctctaaaagttttaaccccatttagcgaaaactcattctaacagttaatgccgctgcatgtccaaacccgagttcgaacct |
48077 |
T |
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| Q |
151 |
gtgattttttcgtattttacctaccgtaattagtatctttgaccacaatagacatccc |
208 |
Q |
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| T |
48078 |
gagacttttccttatgtaacctaccgtaattagtatctttgacc-caatagatatccc |
48134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 232 - 347
Target Start/End: Original strand, 48134 - 48248
Alignment:
| Q |
232 |
ctttgggtctgctatgagactaattttcgagtcgggaacaattcatctagnnnnnnnnngttagagggttttgctacctctcaaatgggcgactctagga |
331 |
Q |
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| T |
48134 |
ctttgggtctgctatgaaactaatttttgagttggcaacaattcatctagtttttttt-gttagagggtttggctacctctcaaatgggcgactctagga |
48232 |
T |
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| Q |
332 |
atcaaacacactgttc |
347 |
Q |
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| T |
48233 |
atcaaacacacagttc |
48248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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