View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18659_low_11 (Length: 332)
Name: NF18659_low_11
Description: NF18659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18659_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 36015374 - 36015060
Alignment:
| Q |
1 |
aaaacataatcattactagttattactaccaaggttctcctnnnnnnnttcattaccaaggtgttatcatgaaaataatatttattatgataatctaata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36015374 |
aaaacataatcattactagttattactaccaaggttctcctaaaaaaattcattaccaaggtgttatcatgaaaataatatttattatgataatctaata |
36015275 |
T |
|
| Q |
101 |
ggatatccataagggcatgcattgagttctagtgtacttaatatggcaaatatgaaggaatgaattgtatgtgtgccaaatataaaacagagaagtcagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36015274 |
ggatatccataagggcatgcattgagttctagtgtacttaatatggcaaatatgaaggaatgaattgtatgtgtgccaaatataaaacagagaagtcagt |
36015175 |
T |
|
| Q |
201 |
tctaaaagcaaaaatatgtttaacatgcacggggaaaggaaagctcaaatttacaagaatatatcagacgagttacagatgctaagggagaatcccaaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36015174 |
tctaaaagcaaaaatatgtttaacatgcacgaggaaaggaaagctcaaatttacaagaatatatcagacgagttacagatgctaagggagaatccgaaaa |
36015075 |
T |
|
| Q |
301 |
acatgtaatgtatct |
315 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
36015074 |
acatataatgtatct |
36015060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 264
Target Start/End: Complemental strand, 36013265 - 36013145
Alignment:
| Q |
143 |
atggcaaatatgaaggaatgaattgtatgtgtgccaaatataaaacagagaagtcagttctaaaagcaaaaatatgtttaacatgcac-ggggaaaggaa |
241 |
Q |
| |
|
|||| ||||||| ||| ||||| ||||||||||||||||| |||| |||||| ||| ||||||||||||||||||| |||| |||||| |||||| || | |
|
|
| T |
36013265 |
atggaaaatatggaggcatgaaatgtatgtgtgccaaata-aaaatagagaaatcaattctaaaagcaaaaatatg-ttaatatgcactggggaagggga |
36013168 |
T |
|
| Q |
242 |
agctcaaatttacaagaatatat |
264 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
36013167 |
agctcaaatttacaagaaaatat |
36013145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University