View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18659_low_17 (Length: 280)

Name: NF18659_low_17
Description: NF18659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18659_low_17
NF18659_low_17
[»] chr3 (6 HSPs)
chr3 (22-272)||(8152844-8153094)
chr3 (159-272)||(49786397-49786508)
chr3 (155-256)||(47940826-47940925)
chr3 (155-272)||(8436880-8436995)
chr3 (155-272)||(29836754-29836868)
chr3 (161-256)||(48778973-48779066)
[»] chr1 (5 HSPs)
chr1 (155-272)||(20186825-20186940)
chr1 (154-272)||(30339635-30339751)
chr1 (155-272)||(51787272-51787387)
chr1 (161-272)||(9672956-9673062)
chr1 (191-256)||(43740407-43740472)
[»] chr7 (10 HSPs)
chr7 (155-272)||(496683-496798)
chr7 (155-272)||(11765707-11765822)
chr7 (155-256)||(2286458-2286557)
chr7 (155-272)||(48057683-48057798)
chr7 (155-256)||(31427260-31427361)
chr7 (154-272)||(42535198-42535314)
chr7 (155-256)||(25185933-25186032)
chr7 (183-272)||(7527248-7527337)
chr7 (162-256)||(23844642-23844734)
chr7 (182-272)||(40855135-40855226)
[»] chr5 (5 HSPs)
chr5 (155-256)||(25955960-25956059)
chr5 (156-272)||(38280257-38280371)
chr5 (155-272)||(1501353-1501468)
chr5 (155-256)||(42250116-42250215)
chr5 (155-265)||(7886355-7886463)
[»] chr2 (2 HSPs)
chr2 (155-272)||(13922185-13922300)
chr2 (158-272)||(11828960-11829072)
[»] chr8 (2 HSPs)
chr8 (152-256)||(4076944-4077046)
chr8 (160-272)||(3780343-3780453)
[»] chr4 (3 HSPs)
chr4 (155-256)||(52055148-52055247)
chr4 (189-272)||(1158239-1158322)
chr4 (183-265)||(49866676-49866758)
[»] chr6 (1 HSPs)
chr6 (146-256)||(33594519-33594627)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 272
Target Start/End: Original strand, 8152844 - 8153094
Alignment:
Q  22 acaaagtaatacatactccgactatggttataggacccttcatgaaatatttttccactagtgttagtagggactaatattctcacgtgcctttgagaat 121  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8152844 acaaagtaatacatactccgactacggttataggacccttcatgaaatatttttccactagtgttagtagggactaatattctcacgtgcctttgagaat 8152943  T
Q  122 gttaaacctaatcaaacgataggaattttcaacgagtggtgatac--atgcacacccataggtgtggcatacacacctaaacctccacataaacatgtga 219  Q
    |||||||||||||| |||||||||||||  |||||||||||||||  ||||||||| ||||  |||||||||||||||||||||||||||||||||||||    
T  8152944 gttaaacctaatcatacgataggaatttctaacgagtggtgatacatatgcacacctatag--gtggcatacacacctaaacctccacataaacatgtga 8153041  T
Q  220 catgtggcctagatcccacaaacattttgtctctcttatctttcattcatctc 272  Q
    |||||||||||||  ||||||||| |||||||||||| ||||| || ||||||    
T  8153042 catgtggcctagactccacaaacactttgtctctcttctcttttatccatctc 8153094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 159 - 272
Target Start/End: Original strand, 49786397 - 49786508
Alignment:
Q  159 ggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctcttat 258  Q
    ||||||||||| |||||||||||||  |||||||||| ||||||||||||||||||||||||| ||| |||||| |||||||||| |||||||||||| |    
T  49786397 ggtgatacatgtacacccataggtg--gcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttct 49786494  T
Q  259 ctttcattcatctc 272  Q
    ||||||||||||||    
T  49786495 ctttcattcatctc 49786508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 47940826 - 47940925
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    |||| |||||||||||||||| || ||||  |||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||    
T  47940826 gagtagtgatacatgcacacctattggtg--gcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctc 47940923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 8436995 - 8436880
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    ||||||||||| ||| |||||||||||||  |||||||||  |||||||| ||||||| || ||||| ||| | |||| |||||||||| ||||||||||    
T  8436995 gagtggtgatatatgtacacccataggtg--gcatacacatttaaacctctacataaatatatgacacgtgtcttagaccccacaaacactttgtctctc 8436898  T
Q  255 ttatctttcattcatctc 272  Q
    || |||||||| ||||||    
T  8436897 ttctctttcatccatctc 8436880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 29836868 - 29836754
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    |||||||||||||||||||| ||||||||  |||||||||| |||||||||||| ||| |||| |||| || |||| | |||||||| | ||||||||||    
T  29836868 gagtggtgatacatgcacactcataggtg--gcatacacacttaaacctccacacaaatatgtaacatatgacctacaccccacaaa-actttgtctctc 29836772  T
Q  255 ttatctttcattcatctc 272  Q
    || ||| |||||| ||||    
T  29836771 ttctctctcattcgtctc 29836754  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 256
Target Start/End: Complemental strand, 48779066 - 48778973
Alignment:
Q  161 tgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctctt 256  Q
    ||||||||||||||| |||||||  |||||| ||  ||||| |||||||||| ||||||||||||| |||||  ||| ||||| ||| ||||||||    
T  48779066 tgatacatgcacacctataggtg--gcatactcatttaaacatccacataaatatgtgacatgtggtctagactccataaacactttatctctctt 48778973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 20186940 - 20186825
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    ||||||||||||||| |||||||||||||  |||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  20186940 gagtggtgatacatgtacacccataggtg--gcatacacacttaaacctccacataaacatgtgacacgtgtcctagatcccacaaacactttgtctctc 20186843  T
Q  255 ttatctttcattcatctc 272  Q
    || |||||||| ||||||    
T  20186842 ttctctttcatccatctc 20186825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 154 - 272
Target Start/End: Original strand, 30339635 - 30339751
Alignment:
Q  154 cgagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctct 253  Q
    |||||||||||||||| |||||||||||||  |||||||||| |||||||| |||||||||||||||| ||| |||||| |||||||||| |||||||||    
T  30339635 cgagtggtgatacatgtacacccataggtg--gcatacacacttaaacctctacataaacatgtgacacgtgtcctagaccccacaaacactttgtctct 30339732  T
Q  254 cttatctttcattcatctc 272  Q
    ||| |||||||| ||||||    
T  30339733 cttctctttcatccatctc 30339751  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 272
Target Start/End: Original strand, 51787272 - 51787387
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    ||||||||||||||| ||| |||||||||  |||||||||| ||||||| ||||||||||||||||| |||  ||||| |||||||||| ||||||||||    
T  51787272 gagtggtgatacatgtacatccataggtg--gcatacacacttaaaccttcacataaacatgtgacacgtgctctagaccccacaaacactttgtctctc 51787369  T
Q  255 ttatctttcattcatctc 272  Q
    || |||||||| ||||||    
T  51787370 ttctctttcatgcatctc 51787387  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 9673062 - 9672956
Alignment:
Q  161 tgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctcttatct 260  Q
    ||||||||| ||||| |||||||  |||||||||| ||||||||||||||||||||||||| ||| ||||||| |||||||||   |||||||||| |||    
T  9673062 tgatacatgtacacctataggtg--gcatacacacttaaacctccacataaacatgtgacacgtgtcctagat-ccacaaaca--ctgtctctcttctct 9672968  T
Q  261 ttcattcatctc 272  Q
    ||||| ||||||    
T  9672967 ttcatccatctc 9672956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 43740472 - 43740407
Alignment:
Q  191 cacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctctt 256  Q
    ||||| |||||||||||| |||||||||| |||||||||| | | |||||||| ||||||||||||    
T  43740472 cacacttaaacctccacacaaacatgtgatatgtggcctaaacctcacaaacactttgtctctctt 43740407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 155 - 272
Target Start/End: Original strand, 496683 - 496798
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    ||||||||||||||| ||| |||||||||  |||||||||| ||||||||||||||||||| ||||| ||| |||||| |||||||||| ||||||||||    
T  496683 gagtggtgatacatgtacatccataggtg--gcatacacacttaaacctccacataaacatatgacacgtgtcctagaccccacaaacactttgtctctc 496780  T
Q  255 ttatctttcattcatctc 272  Q
    || |||||||| ||||||    
T  496781 ttctctttcatccatctc 496798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 155 - 272
Target Start/End: Original strand, 11765707 - 11765822
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    ||||||||||||||| ||| |||||||||  |||||||||| ||||||||||||||||||||||||| ||| ||| || |||||||||| ||||||||||    
T  11765707 gagtggtgatacatgtacatccataggtg--gcatacacacttaaacctccacataaacatgtgacacgtgtccttgaccccacaaacactttgtctctc 11765804  T
Q  255 ttatctttcattcatctc 272  Q
    || |||||||| ||||||    
T  11765805 ttctctttcatccatctc 11765822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 2286458 - 2286557
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    |||| |||||||||||||||| || ||||  |||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||    
T  2286458 gagtagtgatacatgcacacctattggtg--gcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctc 2286555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 48057798 - 48057683
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    ||||||||||||||| |||||||||||||  ||||||| |  ||||| ||||||||||||||||||| ||| |||||| |||||||||| ||||||||||    
T  48057798 gagtggtgatacatgtacacccataggtg--gcatacatatttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctc 48057701  T
Q  255 ttatctttcattcatctc 272  Q
    || |||||||| ||||||    
T  48057700 ttctctttcatccatctc 48057683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 256
Target Start/End: Complemental strand, 31427361 - 31427260
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    ||||||||||||||||||| |||||||||||||||||| |  ||||||||| |||||| |||||||||||||  ||||  ||||||||| ||||||||||    
T  31427361 gagtggtgatacatgcacatccataggtgtggcatacataattaaacctccgcataaatatgtgacatgtggtttagactccacaaacactttgtctctc 31427262  T
Q  255 tt 256  Q
    ||    
T  31427261 tt 31427260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 272
Target Start/End: Complemental strand, 42535314 - 42535198
Alignment:
Q  154 cgagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctct 253  Q
    |||||| ||||| ||| |||| ||||||||   ||||||||| ||||||||||||||||||||||||| ||| | || |||||||||||| |||||||||    
T  42535314 cgagtgatgatatatgtacactcataggtga--catacacacttaaacctccacataaacatgtgacacgtgtcttatatcccacaaacactttgtctct 42535217  T
Q  254 cttatctttcattcatctc 272  Q
    ||| |||||||| ||||||    
T  42535216 cttctctttcatccatctc 42535198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 256
Target Start/End: Complemental strand, 25186032 - 25185933
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    |||||||||| ||||||||| ||||||||   ||||||||| |||||||||||| ||||||||||||||||||||||| |||||||| | ||| ||||||    
T  25186032 gagtggtgatgcatgcacactcataggtga--catacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaatactttatctctc 25185935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 272
Target Start/End: Complemental strand, 7527337 - 7527248
Alignment:
Q  183 gtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctcttatctttcattcatctc 272  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||  ||| ||||| ||||||||| || | |||||| ||||||    
T  7527337 gtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagactccataaacactttgtctcttttttttttcatccatctc 7527248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 256
Target Start/End: Original strand, 23844642 - 23844734
Alignment:
Q  162 gatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctctt 256  Q
    |||||||||||| ||||||||    |||||||||  ||| |||||||||||||||||||||||| |||||| | |||||||| ||||||||||||    
T  23844642 gatacatgcacatccataggtaa--catacacactcaaatctccacataaacatgtgacatgtgccctagacctcacaaacactttgtctctctt 23844734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 40855226 - 40855135
Alignment:
Q  182 tgtggcatacacacctaaacctccacataaacatgtgacatgtggc-ctagatcccacaaacattttgtctctcttatctttcattcatctc 272  Q
    ||||| ||| |||| |||||||| ||| ||||||||||| |||||  ||||| | |||||||| ||||||||| ||  ||||||||||||||    
T  40855226 tgtggtatatacacttaaacctctacacaaacatgtgacctgtgggtctagacctcacaaacactttgtctcttttccctttcattcatctc 40855135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 155 - 256
Target Start/End: Complemental strand, 25956059 - 25955960
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    |||||||||||||||||||| ||||||||  |||||||||  |||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||    
T  25956059 gagtggtgatacatgcacactcataggtg--gcatacacatttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctc 25955962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 156 - 272
Target Start/End: Complemental strand, 38280371 - 38280257
Alignment:
Q  156 agtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctct 255  Q
    |||||||||||||| ||| |||||||||  | |||||||| ||||||||||||||||||||||||| ||| |||||| |||||||||| |||||||||||    
T  38280371 agtggtgatacatgtacatccataggtg--gtatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctct 38280274  T
Q  256 tatctttcattcatctc 272  Q
    | |||||||| ||||||    
T  38280273 tctctttcatccatctc 38280257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 1501468 - 1501353
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    ||||||||||||||||| | |||||||||   ||||||||| ||||||||||||||||||| |||||||| ||||||| |||| | ||| ||||||||||    
T  1501468 gagtggtgatacatgcagatccataggtga--catacacacttaaacctccacataaacatatgacatgtagcctagaccccatatacactttgtctctc 1501371  T
Q  255 ttatctttcattcatctc 272  Q
    || |||||||| ||||||    
T  1501370 ttctctttcatccatctc 1501353  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 42250116 - 42250215
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    |||||||||||||||||||||||||  ||   |||| |||| |||||||||||| |||||||||||||||||| |||| |||||||||| ||||||||||    
T  42250116 gagtggtgatacatgcacacccataaatga--catagacacttaaacctccacacaaacatgtgacatgtggcttagaccccacaaacactttgtctctc 42250213  T

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Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 265
Target Start/End: Original strand, 7886355 - 7886463
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    |||||||||| |||||| ||  |||||||   ||||||||| |||||||||||| ||||||||||||||||||||| |||||||| | ||||||||||||    
T  7886355 gagtggtgattcatgcatacttataggtga--catacacacttaaacctccacacaaacatgtgacatgtggcctaaatcccacatatattttgtctctc 7886452  T
Q  255 ttatctttcat 265  Q
    ||  |||||||    
T  7886453 ttccctttcat 7886463  T

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Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 155 - 272
Target Start/End: Original strand, 13922185 - 13922300
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    ||||||||||||||| ||| |||||||||  |||||||||| ||||||||||| ||||||||||||| ||| |||||| |||||||||| ||||||||||    
T  13922185 gagtggtgatacatgtacatccataggtg--gcatacacacttaaacctccacgtaaacatgtgacacgtgtcctagaccccacaaacactttgtctctc 13922282  T
Q  255 ttatctttcattcatctc 272  Q
    || |||||||| ||||||    
T  13922283 ttctctttcatccatctc 13922300  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 272
Target Start/End: Original strand, 11828960 - 11829072
Alignment:
Q  158 tggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctctta 257  Q
    |||||| |||||||||| ||||||||  |||||||||| |||||||||||||||| |||||||||||| |||||| |||||||||| |||| ||||||      
T  11828960 tggtgagacatgcacactcataggtg--gcatacacacttaaacctccacataaatatgtgacatgtgtcctagaccccacaaacactttgcctctctcc 11829057  T
Q  258 tctttcattcatctc 272  Q
    |||||||| ||||||    
T  11829058 tctttcatccatctc 11829072  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 4077046 - 4076944
Alignment:
Q  152 aacgagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtct 251  Q
    |||||||| ||||||||||| |||||||||||  |||||||||| |||||||||||| ||||||||||||||| ||||||| |||||||||| |||||||    
T  4077046 aacgagtgatgatacatgcatacccataggtg--gcatacacacttaaacctccacacaaacatgtgacatgtagcctagaccccacaaacaatttgtct 4076949  T
Q  252 ctctt 256  Q
    |||||    
T  4076948 ctctt 4076944  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 3780453 - 3780343
Alignment:
Q  160 gtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctcttatc 259  Q
    |||||||||| ||| |||||||||  ||||||||||  ||||||||||| ||||||||||||||| ||||| | || | ||||| ||||||||||||  |    
T  3780453 gtgatacatgtacatccataggtg--gcatacacactcaaacctccacacaaacatgtgacatgtagcctaaacccgagaaacactttgtctctcttccc 3780356  T
Q  260 tttcattcatctc 272  Q
    |||||| ||||||    
T  3780355 tttcatccatctc 3780343  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 256
Target Start/End: Complemental strand, 52055247 - 52055148
Alignment:
Q  155 gagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctc 254  Q
    |||||||||||||||||||  ||||||||  |||||||||| |||||||| ||| ||||||||||||||||||||||| |||||||||| ||||||||||    
T  52055247 gagtggtgatacatgcacattcataggtg--gcatacacacttaaacctctacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctc 52055150  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 1158322 - 1158239
Alignment:
Q  189 tacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctcttatctttcattcatctc 272  Q
    ||||||| |||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||  ||||||||||||||    
T  1158322 tacacacttaaacctccacacaaacatgtgacatgtggcctagaccctacaaacattttgtctctcttccctttcattcatctc 1158239  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 49866676 - 49866758
Alignment:
Q  183 gtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacattttgtctctcttatctttcat 265  Q
    |||| |||||| | ||||||| |||| ||| |||||||||||| | |||| | || ||||| |||||||||||| ||||||||    
T  49866676 gtggtatacacgcttaaaccttcacacaaatatgtgacatgtgacttagaccacataaacactttgtctctcttctctttcat 49866758  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 256
Target Start/End: Complemental strand, 33594627 - 33594519
Alignment:
Q  146 attttcaacgagtggtgatacatgcacacccataggtgtggcatacacacctaaacctccacataaacatgtgacatgtggcctagatcccacaaacatt 245  Q
    ||||| || |||| |||||||||||||| |||| ||||  |||||||||| ||||||| |||| ||||||||||||||||||||||| |||||||| | |    
T  33594627 attttaaaagagtagtgatacatgcacatccattggtg--gcatacacacttaaaccttcacacaaacatgtgacatgtggcctagaccccacaaatact 33594530  T
Q  246 ttgtctctctt 256  Q
    |||||||||||    
T  33594529 ttgtctctctt 33594519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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