View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18659_low_2 (Length: 779)
Name: NF18659_low_2
Description: NF18659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18659_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 59 - 417
Target Start/End: Original strand, 4112520 - 4112878
Alignment:
| Q |
59 |
gattcagccatggaattggctctgtctttggagaagttagtaaatgagaaacttctgaatgttcacagtgtaatgcctctttctctctgtttttgaattg |
158 |
Q |
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| T |
4112520 |
gattcagccatggaattggctctgtctttggagaagttagtaaatgagaaacttctgaatgttcacagtgtaatgcctctttctctctgtttttgaattg |
4112619 |
T |
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| Q |
159 |
aatattgctcttttcatgcaataaaaatttctgtttcctatatatacatattgagatcaaatggctaatcaatctaagaattatgtttcatgaatataat |
258 |
Q |
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| T |
4112620 |
aatattgctcttttcatgcaataaaaatttctgtttcctatatatacatattgagatcaaatggctaatcaatctaagaattatgtttcatgaatataat |
4112719 |
T |
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| Q |
259 |
aataggtggctgatcgtaacaatgatcctcaattggcagacttcatcgagagcgagtttttggtagagcaggtaacacttaccttaagttgtcaagttga |
358 |
Q |
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| T |
4112720 |
aataggtggctgatcgtaacaatgatcctcaattggcagacttcatcgagagcgagtttttggtagagcaggtaacacttaccttaagttgtcaagttga |
4112819 |
T |
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| Q |
359 |
aacttgaaatcatttttctgtatacttggagtagaagaaatactttgtttgtatccatg |
417 |
Q |
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| T |
4112820 |
aacttgaaatcatttttctgtatacttggagcagaagaaatactttgtttgtatccatg |
4112878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 441 - 769
Target Start/End: Original strand, 4113104 - 4113422
Alignment:
| Q |
441 |
aattgtagatgttttcagattatacttggatgatttttgacatgaaaaatctttagatccaaaagttactaagtgtatcaatattttccaattttttctt |
540 |
Q |
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| T |
4113104 |
aattgtagatgttttcagattatacttggatga-------catgaaaaatctttagatccaaaagttactaagtgtatcaaaattttccaattttttct- |
4113195 |
T |
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| Q |
541 |
cttgttcttatatgtattttccttgcacaggttgaatcaattaagaagatatcagagtatgtgactcaactgagattagttggaaagggtcacggtatgt |
640 |
Q |
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| T |
4113196 |
--tgttcttatatgtattttccttgcacaggttgaatcaattaagaagatatcagagtatgtgactcaactgagattagttggaaagggtcacggtatgt |
4113293 |
T |
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| Q |
641 |
atatttcctccactaacattggtaatatgaaaatcaaatgaatgaggtttaacagaacatttgtttttgttggttgtaggtgtgtggcactttgatcaga |
740 |
Q |
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| T |
4113294 |
atatttcctccactaccattggtaatatgaaaatcaaatgaatgaggtttaacagaacatttgtttttgttggttgtaggtgtgtggcactttgatcaga |
4113393 |
T |
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| Q |
741 |
ctcttctccattgattaagatgatgatgt |
769 |
Q |
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| T |
4113394 |
ctcttctccattgattaagatgatgatgt |
4113422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 568 - 644
Target Start/End: Complemental strand, 25792566 - 25792490
Alignment:
| Q |
568 |
caggttgaatcaattaagaagatatcagagtatgtgactcaactgagattagttggaaagggtcacggtatgtatat |
644 |
Q |
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| T |
25792566 |
caggttgaatcaattaagaagatatcagagtatgtgtctcaattgagaagggttggaaagggtcatggtatgtatat |
25792490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 25792934 - 25792862
Alignment:
| Q |
68 |
atggaattggctctgtctttggagaagttagtaaatgagaaacttctgaatgttcacagtgtaatgcctcttt |
140 |
Q |
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| T |
25792934 |
atggaattagctttgtctttggagaagttaacaaatgaaaaacttctgaatgtgcatagtgtaatgcctcttt |
25792862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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