View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18659_low_21 (Length: 257)
Name: NF18659_low_21
Description: NF18659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18659_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 43093892 - 43094062
Alignment:
| Q |
1 |
gaagaaagagaaaataaataacctggttttggtttttcctcctaatggggtgattaaatttgcagttgaatccaaacttgcaactcccagtcttcatata |
100 |
Q |
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| T |
43093892 |
gaagaaagagaaaataaataacctggttttggtttttcctcctaatggggtgattaaatttgcagttgaatccaaacttgcaactcccagtcttcatata |
43093991 |
T |
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| Q |
101 |
aaatgaacaatcttcagcttcaggcctcaaagggaattgatgagttccatcactgcttttctcttccttct |
171 |
Q |
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| T |
43093992 |
aaatgaacaatcttcagcttcaggcctcaaagggaattgatgagttccatcactgcttttctcttccttct |
43094062 |
T |
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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 34207379 - 34207461
Alignment:
| Q |
48 |
gggtgattaaatttgcagttgaatccaaacttgcaactcccagtcttcatataaaatgaacaatcttcagcttcaggcctcaa |
130 |
Q |
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| T |
34207379 |
gggtgattaaacttgcaattgaatccaaatttgcaagttccagtcttgagataaaaagaacagtcttcagcttcaggcctcaa |
34207461 |
T |
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