View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18659_low_25 (Length: 247)
Name: NF18659_low_25
Description: NF18659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18659_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 33044520 - 33044751
Alignment:
| Q |
11 |
cataggaacaaagaaaggattgagatcatagaaagtttatcattgtgacttctttccacaatcctaagataaggatagtctactcacaagagttcatcaa |
110 |
Q |
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| T |
33044520 |
catagcaacatagaaaggattgagatcatagaaagtttatcattgtgacttcttttcacaatcccaagataaggatagtctactcacaagagctcatcaa |
33044619 |
T |
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| Q |
111 |
catagtaaaataaattacataaacagaagaaaaaagattgaaaaacttaattttatcaattaatagtaaggtaaaagaacaagaacgaactatgaacctt |
210 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33044620 |
catagtaaaataaattacataagcagaag-aaaaagattgaaaaacttaattttatcgattaatagtaaggtaaaagaacaagaactaactatgaacctt |
33044718 |
T |
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| Q |
211 |
gggatagaatgctaaaaatatctaagacaatta |
243 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
33044719 |
gggatagaatgctaaaaatatctaagacaatta |
33044751 |
T |
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