View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18659_low_26 (Length: 247)
Name: NF18659_low_26
Description: NF18659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18659_low_26 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 36283718 - 36283952
Alignment:
| Q |
11 |
aaggcgagtagttatgcggttgagaatttgaacaaattgaaagaagcgcgtattggtatctattttgatcatgaaaataaagaagtaaaacaaaatatat |
110 |
Q |
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| T |
36283718 |
aaggcgagtaattatgaggttgagaatttgaacaaattgaaagaagcacgtattggtatctattttgatcatgaaaataaagaagtaaaacaaaatatat |
36283817 |
T |
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| Q |
111 |
caaatctcttcaatggcattcataaaaccaggtttctttgcttagatatggattccacagaggtaaaagccctatttaccgatatttttaatataggaat |
210 |
Q |
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| T |
36283818 |
caaatctcctcaatggcattcataaaaccaggtttctttgcttagatatggattccacagaggtaagagccctatttaccgatatttttaatatagga-- |
36283915 |
T |
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| Q |
211 |
attgtgtgttatttttcataactcttttgttattttt |
247 |
Q |
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| T |
36283916 |
attgtgtcttatttttcataactcttttgttattttt |
36283952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 34554472 - 34554624
Alignment:
| Q |
23 |
tatgcggttgagaatttgaacaaattgaaagaagcgcgtattggtatctattttgatcatgaaaataaagaagtaaaacaaaatatatcaaatctcttca |
122 |
Q |
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| T |
34554472 |
tatgtggttgagaatttggacaatttgaaagaagcacatattggtatccattttgattatgaaaataaaaaagtaaaagaaaatatagcaaatattttca |
34554571 |
T |
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| Q |
123 |
atggcattcataaaaccaggtttctttgcttagatatggattccacagaggta |
175 |
Q |
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| T |
34554572 |
atggggttcgtaaaaccagatttctttgcttagatttgtataccacagaggta |
34554624 |
T |
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