View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18659_low_31 (Length: 219)
Name: NF18659_low_31
Description: NF18659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18659_low_31 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 36284387 - 36284185
Alignment:
| Q |
17 |
ataaattgtggtcctcttaagcacttttccgctcttcaaaatgtaccttataagttcgaactcttcatccgtgccttcataatctctgaatatgaaagta |
116 |
Q |
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| T |
36284387 |
ataaattgtggtcctctcaagcacttttccactcttcaaaatgtaccttataagttcaaactcttcatccgtgccttcataatctctgaatatgaaagta |
36284288 |
T |
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| Q |
117 |
gtaaggtgtgatgaaagacagctaggaactattgttggttctgcccatttaatttcattatcgcataggtcatcaacctgtcaaaagagatcacaaaaca |
216 |
Q |
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| T |
36284287 |
gtaaggtgtgatgaaagacagctaggaactattgttggttctgcccatttaatttcattatcgcataggtcatcaacctgtcaaaagagatcacaaaaca |
36284188 |
T |
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| Q |
217 |
tct |
219 |
Q |
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||| |
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| T |
36284187 |
tct |
36284185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 34555251 - 34555068
Alignment:
| Q |
17 |
ataaattgtggtcctcttaagcacttttccgctcttcaaaatgtaccttataagttcgaactcttcatccgtgccttcataatctctgaatatgaaagta |
116 |
Q |
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|||||||||||| ||||||||||||||||| || || |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34555251 |
ataaattgtggttctcttaagcacttttccactatttaaaatgtaacttataagttcaaactcttcatccgtgccttcataatctctgaatataaaagta |
34555152 |
T |
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| Q |
117 |
gtaaggtgtgatgaaagacagctaggaactattgttggttctgcccatttaatttcattatcgcataggtcatcaacctgtcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||| ||||| ||||||||||||||| |
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| T |
34555151 |
gtaaggtgtgatgaaagacagctaggaactattgttggttgtctccattcaatttcattatcacatagttcatcaacctgtcaa |
34555068 |
T |
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