View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18659_low_4 (Length: 438)
Name: NF18659_low_4
Description: NF18659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18659_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 34448550 - 34448224
Alignment:
| Q |
1 |
acttcattcgcaaggaaatcgagaattattggaaggtcatgaatgaagagtgtctcaagttagacaacatcccaagaccagtgcttgaatttattatgaa |
100 |
Q |
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| T |
34448550 |
acttcattcgcaaggaaatcgagaattattggaaggtcatgaatgaagagtgtctcaagttagacaacatcccaagaccagtgcttgaatttattatgaa |
34448451 |
T |
|
| Q |
101 |
tgtggcgcgagtgactgagtttgcatacgaaaactttgaggataaatacacaaaaccagaactgctaaaagattacattgttgcactacttgtggatcct |
200 |
Q |
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| T |
34448450 |
tgtggcgcgagtgactgagtttgcatacgaaaactttgaggataaatacacaaaaccagaactgctaaaagattacattgttgcactacttgtggatcct |
34448351 |
T |
|
| Q |
201 |
ataagcatcgagcaaagtgagtagaagaagcaagatcagttataataagtggctattttacatgttaatcaatctgtttttccttgatcgtgaatcgttt |
300 |
Q |
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| T |
34448350 |
ataagcatcgagctaagtgagtagaagaagcaagatcagttataataagtggctattttacattttaatccttctgtttttccttgatcgtgaatcgttt |
34448251 |
T |
|
| Q |
301 |
ttattgttgtattgataattcaaacta |
327 |
Q |
| |
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| T |
34448250 |
ttattgttgtattgataattcaaacta |
34448224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 39 - 259
Target Start/End: Complemental strand, 34459745 - 34459525
Alignment:
| Q |
39 |
atgaatgaagagtgtctcaagttagacaacatcccaagaccagtgcttgaatttattatgaatgtggcgcgagtgactgagtttgcatacgaaaactttg |
138 |
Q |
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| T |
34459745 |
atgaatgaagagtgcctaaaattacaccacattccaaggccagtgcttgaatgtattcttaattttgcgcgaggaactcacttcatatacgaagactttg |
34459646 |
T |
|
| Q |
139 |
aggataaatacacaaaaccagaactgctaaaagattacattgttgcactacttgtggatcctataagcatcgagcaaagtgagtagaagaagcaagatca |
238 |
Q |
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| T |
34459645 |
aggataaatacacaaatccagatctgctcaaagattacattgctgcactgcttgtagatcctataagcatcgagcaatgcgagtagaagaagcaagatca |
34459546 |
T |
|
| Q |
239 |
gttataataagtggctatttt |
259 |
Q |
| |
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||||||||||||||||||||| |
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| T |
34459545 |
gttataataagtggctatttt |
34459525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 39 - 255
Target Start/End: Complemental strand, 34483876 - 34483660
Alignment:
| Q |
39 |
atgaatgaagagtgtctcaagttagacaacatcccaagaccagtgcttgaatttattatgaatgtggcgcgagtgactgagtttgcatacgaaaactttg |
138 |
Q |
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| T |
34483876 |
atgaatgaagagtgcctcaagatagaaaacattccaaggtcggtgcttgaaattattcttaatgtggcacgaataacagagttcacatacgaaaactttg |
34483777 |
T |
|
| Q |
139 |
aggataaatacacaaaaccagaactgctaaaagattacattgttgcactacttgtggatcctataagcatcgagcaaagtgagtagaagaagcaagatca |
238 |
Q |
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||||||||||||||||| |||||||| | |||||||||||||||||||||||| | ||||||||||| ||||||||| | |||||||||||||| |||| |
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| T |
34483776 |
aggataaatacacaaaagcagaactgatgaaagattacattgttgcactacttatagatcctataagaatcgagcaatgcaagtagaagaagcaaaatca |
34483677 |
T |
|
| Q |
239 |
gttataataagtggcta |
255 |
Q |
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| T |
34483676 |
attataataagtggcta |
34483660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 319 - 424
Target Start/End: Complemental strand, 34447812 - 34447707
Alignment:
| Q |
319 |
ttcaaactataatgccacaattcgaaatataaataacctttgtactattacatttggtttaactgtgaatggttttattattgtattggtaactcaatct |
418 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
34447812 |
ttcaaactataatgccacaatttgaaatataaattacctttgtactattgcatttgatttaactgtgaatggttttattattgtatcggtaactcaattt |
34447713 |
T |
|
| Q |
419 |
gtaatg |
424 |
Q |
| |
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|||||| |
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| T |
34447712 |
gtaatg |
34447707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 34473781 - 34473669
Alignment:
| Q |
42 |
aatgaagagtgtctcaagttagacaacatcccaagaccagtgcttgaatttattatgaatgtggcgcgagtgactgagtttgcatacgaaaactttgagg |
141 |
Q |
| |
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|||||||||| |||||||||||| ||||||| | || |||||||||| |||| | |||||||| ||| | || ||||| | |||||||||| |||| |
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| T |
34473781 |
aatgaagagttcctcaagttagactacatccccaaccctgtgcttgaatgtattcttaatgtggcacgaataaccgagttcacctacgaaaactacgagg |
34473682 |
T |
|
| Q |
142 |
ataaatacacaaa |
154 |
Q |
| |
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||||||||||||| |
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| T |
34473681 |
ataaatacacaaa |
34473669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 259
Target Start/End: Original strand, 6132271 - 6132505
Alignment:
| Q |
25 |
attattggaaggtcatgaatgaagagtgtctcaagttagacaacatcccaagaccagtgcttgaatttattatgaatgtggcgcgagtgactgagtttgc |
124 |
Q |
| |
|
||||||||| || |||||||||||||||||||| |||||| ||||||||| |||||| | ||| |||| | |||||||||||||| | ||||| | |
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| T |
6132271 |
attattggatagttatgaatgaagagtgtctcaaattagactgcatcccaagcccagtggtcgaaagtattgttaatgtggcgcgagtagccgagttcac |
6132370 |
T |
|
| Q |
125 |
atacgaaaactttgaggataaatacacaaaaccagaactgctaaaagattacattgttgcactacttgtggatcctataagcatcgagcaaagtgagtag |
224 |
Q |
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|||||||||||||||||||||||||||||| ||| |||| ||||| ||||||||| ||| || | | ||||||||||| || || |||| ||| |
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| T |
6132371 |
atacgaaaactttgaggataaatacacaaatggggaattgctgaaagactacattgttaaactgattctaaaacctataagcatttagaaatgtgaatag |
6132470 |
T |
|
| Q |
225 |
aagaagcaagatcagttataataagtggctatttt |
259 |
Q |
| |
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||||||| || ||||||||||||||||| |||| |
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| T |
6132471 |
gtgaagcaaaattagttataataagtggctctttt |
6132505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 6135936 - 6135986
Alignment:
| Q |
39 |
atgaatgaagagtgtctcaagttagacaacatcccaagaccagtgcttgaa |
89 |
Q |
| |
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|||||||||||||| ||||||||||| ||| |||||||||||||||||| |
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| T |
6135936 |
atgaatgaagagtgcctcaagttagattgcataccaagaccagtgcttgaa |
6135986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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