View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18659_low_6 (Length: 423)
Name: NF18659_low_6
Description: NF18659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18659_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 39792298 - 39791906
Alignment:
| Q |
16 |
aatattgttcaaaggtaaaattaatacttctactcttttattccattttgggaagtttaatgagataattaatatttcatcctactgnnnnnnnn--cct |
113 |
Q |
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| T |
39792298 |
aatattgttcaaaggtaaaattaatacttctactcttttattccattttgggaagtttaatgagataattaatatttcatcctactgttttttttttcct |
39792199 |
T |
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| Q |
114 |
tcaggataagttgttttaaagtatgatcataagccgagtcacaattacagtctagaattatgatctttctcttcaagttgttattttagaatttttcttg |
213 |
Q |
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| T |
39792198 |
tcaggataagttgttttaaagtatgatcataagccgagtcacaattacagtctagaattatgatctttctcttcaagttgttattttagaatttttcttg |
39792099 |
T |
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| Q |
214 |
gttatgtaaagatcctttttaagtaaattgtgattatattatacaaatttcttgaggtccaagttattttaacttatttcattgagggtttcaagcaaaa |
313 |
Q |
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| T |
39792098 |
gttatgtaaagatcctttttaagtaaattgtgattatattatacaaatttcttgaggtccaagttattttaacttatttcattgagggtttcaagcaaaa |
39791999 |
T |
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| Q |
314 |
actttaaaatcatctcccatttggaataaaatgtttgaactatatgttaagggaaatgcctcttctcaagtaaatatgaagtgaatgggatta |
406 |
Q |
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| T |
39791998 |
actttaaaatcatctcccatttagaataaaatgtttgaactatatgttaagggaaatgcctcttctcaagtaaatatgaagtgaatgggatta |
39791906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 296
Target Start/End: Original strand, 17480557 - 17480650
Alignment:
| Q |
203 |
aatttttcttggttatgtaaagatcctttttaagtaaattgtgattatattatacaaatttcttgaggtccaagttattttaacttatttcatt |
296 |
Q |
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||||||| |||||||||||||||| |||||| |||||||| ||||| |||||||| |||| || | ||||||||| ||| |||||||||| |
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| T |
17480557 |
aatttttattggttatgtaaagatatcttttaaataaattgtaattattttatacaagtttcatggaatgcaagttattctaaattatttcatt |
17480650 |
T |
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