View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18659_low_8 (Length: 401)
Name: NF18659_low_8
Description: NF18659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18659_low_8 |
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| [»] scaffold0318 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 384
Target Start/End: Complemental strand, 43381364 - 43380973
Alignment:
| Q |
10 |
aagaaaatagaacagaaaataaatgattttagatactaaaatattcaattggaaaataaatggaacatcctctttcacacaaaatccagtccaaatgatt |
109 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43381364 |
aagaaaatagaacagaaaataaatgattctagatactaaaatattcaattggaaaataaatggaacatcctctttcacacaaaatccagtccaaatgagt |
43381265 |
T |
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| Q |
110 |
caatatataatcatcatgtattataaactgcaaactaat------------catcatcttcataaag-----aaaatatttgataaatactccaaagagt |
192 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43381264 |
caatatataatcatcatgtattataaactgcaaagtaatttcctgaagaatcatcatcttcataaagaaaagaaaatatttgataaatactccaaagagt |
43381165 |
T |
|
| Q |
193 |
tttgaatatgataataaactaaacaatggaaaaaaggggattaaaatccaaccaaaacagttagctgcattaatgctagacctcaatcgtcaaatctcaa |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
43381164 |
tttgaatatgataataaactaaacaatggaaaaaaggggattaaaatccaaccaaaacagttagctgcattaatgctagacctcaaacgtgaaatctcaa |
43381065 |
T |
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| Q |
293 |
atgactctcctgagctctccagtattcagagcatattggcgatgcttggacaagattggcgccacctgaactgcctctaatattgaagctaa |
384 |
Q |
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| T |
43381064 |
atgactctcctgagctctccagtattcagagcatattggcgatgcttggacaagattggcgccacctgaactgcctctaatattgaagctaa |
43380973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 25870937 - 25870744
Alignment:
| Q |
10 |
aagaaaatagaacagaaaataaatgattttagatactaaaatattcaattggaaaataaatggaacatcctctttcacacaaaatccagtccaaatgatt |
109 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25870937 |
aagaaaatagaacagaaaataaatgattctagatactaaaatattcaattggaaaataaatggaacttcctctttcacacaaaatccagtccaaatgatt |
25870838 |
T |
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| Q |
110 |
caatatataatcatcatgtattataaactgcaaact------------aatcatcatcttcataaagaaaatatttgataaatactccaaagag |
191 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25870837 |
caatatataatcatcatgtattataaactgcaaactaatttcctgaagaatcatcatcttcataaagaaaatatttgataaatactccaaagag |
25870744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0318 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0318
Description:
Target: scaffold0318; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 3657 - 3706
Alignment:
| Q |
13 |
aaaatagaacagaaaataaatgattttagatactaaaatattcaattgga |
62 |
Q |
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||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
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| T |
3657 |
aaaatagaacagataataagtgattttagatactaaaattttcaattgga |
3706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 30401941 - 30401892
Alignment:
| Q |
13 |
aaaatagaacagaaaataaatgattttagatactaaaatattcaattgga |
62 |
Q |
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|||||||||||| ||||| ||||||||||||||||||| |||||||||| |
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| T |
30401941 |
aaaatagaacagctaataagtgattttagatactaaaatgttcaattgga |
30401892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 47480780 - 47480731
Alignment:
| Q |
13 |
aaaatagaacagaaaataaatgattttagatactaaaatattcaattgga |
62 |
Q |
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||||||||||| | ||||| ||||||||||||||||||| |||||||||| |
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| T |
47480780 |
aaaatagaacaaataataagtgattttagatactaaaatgttcaattgga |
47480731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 29334721 - 29334770
Alignment:
| Q |
13 |
aaaatagaacagaaaataaatgattttagatactaaaatattcaattgga |
62 |
Q |
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||||||||||| | ||||| ||||||||||||||||||| |||||||||| |
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| T |
29334721 |
aaaatagaacaaataataagtgattttagatactaaaatgttcaattgga |
29334770 |
T |
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