View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18659_low_9 (Length: 385)
Name: NF18659_low_9
Description: NF18659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18659_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 6273301 - 6272945
Alignment:
| Q |
19 |
tgtgatgtagaattcaccacgtattcattcatgttattactatagtagttacgtaagaccttaactaccaaattgtcaacgagaaatagcattttaaggc |
118 |
Q |
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| T |
6273301 |
tgtgatgtagaattcaccacgtattcattcatgttattactatagtagttacgtaagaccttaactaccaaattgtcaacgagaaatagcattttaaggc |
6273202 |
T |
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| Q |
119 |
acgaatttaacatgaaaattcgactataaattatgttatatagttaatataatttagatatgtgattaatcatgtttattaaatgattaatgagtatgat |
218 |
Q |
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| T |
6273201 |
acgaatttaacatgaaaagtcgactataaattatgttatatagttaatataatttagatatgtgattaatcatgtttattaaatgattaatgagtatgat |
6273102 |
T |
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| Q |
219 |
aaggtgtaccaaatcagttattaatcacatataaagattaaacgtaatataagcaaattaaaaatttagaacnnnnnnnnatatatgttttaataactta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6273101 |
aaggtgtaccaaatcagttattaatcacatataaagattaaacgtaatataagcaaattaaaaatttagaacttttttttatatatgttttaataactta |
6273002 |
T |
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| Q |
319 |
gaacttctaattcaataattaaatatataaaatttagaatcatgtagtatgtttcat |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6273001 |
gaacttctaattcaataattaaatatataaaatttagaatcatgtagtatgtttcat |
6272945 |
T |
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