View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1865_high_1 (Length: 669)
Name: NF1865_high_1
Description: NF1865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1865_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 332 - 654
Target Start/End: Original strand, 42929751 - 42930073
Alignment:
| Q |
332 |
atagcactcgttgtgtttcttgttcggaagctcgcgaggaagaggttgatactcctagttcttctttgttgttagaacaagttagggaggagattgattg |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42929751 |
atagcactcgttgtgtttcttgttcggaagctcgcgaggaagaggttgatactcctagttcttctttgttgttagaacaagttagggaggagattgattg |
42929850 |
T |
|
| Q |
432 |
tgaagatgaggttgaagcttcacaaactcaagcttcaacttcatcttcgtcttcaagtacttaatttaaggttgaggggaatgattttaattatgtatac |
531 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42929851 |
tgaagatgaagttgaagcttcacaaactcaagcttcaacttcatcttcgtcttcaagtacttaatttaaggttgaggggaatgattttaattatgtatac |
42929950 |
T |
|
| Q |
532 |
caaatattagtagtagtgtatcataaagtaacattttttgtttcattatttttcatgttaatttccctcttttgcttacgtatttggttctttgcgctga |
631 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42929951 |
caaatagtagtagtagtgtatcataaagtaacattttttgtttcattatttttcatgttaatttccctcttttgcttacgtatttggttctttgcgctga |
42930050 |
T |
|
| Q |
632 |
gagattcctcacattcacatagt |
654 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
42930051 |
cagattcttcacattcacatagt |
42930073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 42929433 - 42929654
Alignment:
| Q |
14 |
ctcaaagcttgccattcaaagatagtgtagttttatctatggaatctcgagatccttatgtcgattttcgaaagtctatggaggaaatagtagaagctca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42929433 |
ctcaaagcttgccattcaaagatagtgtagttttatctatggaatctcgagatccttatgtcgattttcgaaagtctatggaggaaatagtagaagctca |
42929532 |
T |
|
| Q |
114 |
cgatgttaaagattgggaaggtcttcaagagcttttgagttggtatttgaaggtcaatgagaaaatcaatcatggctatattgttggtgcttttgttgat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42929533 |
cgatgttaaagattgggaaggtcttcaagagcttttgagttggtatttgaaggtcaatgagaaaatcaatcatggctatattgttggtgcttttgttgat |
42929632 |
T |
|
| Q |
214 |
ttattggttggtcttacatttg |
235 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
42929633 |
ttattggttggtcttacatttg |
42929654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 50463383 - 50463289
Alignment:
| Q |
121 |
aaagattgggaaggtcttcaagagcttttgagttggtatttgaaggtcaatgagaaaatcaatcatggctatattgttggtgcttttgttgattt |
215 |
Q |
| |
|
||||||||||| ||| | ||||||||||||||||||||||||| || |||| |||| |||||||| | |||||||||||||||||||||||| |
|
|
| T |
50463383 |
aaagattgggatggtttggaagagcttttgagttggtatttgaaagttaatggtaaaaataatcatgggtttattgttggtgcttttgttgattt |
50463289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 25531099 - 25531024
Alignment:
| Q |
143 |
agcttttgagttggtatttgaaggtcaatgagaaaatcaatcatggctatattgttggtgcttttgttgatttatt |
218 |
Q |
| |
|
||||||||||||||||||| | || |||||||||| |||||||| | |||| ||| ||||||| |||||||||| |
|
|
| T |
25531099 |
agcttttgagttggtattttgaagttaatgagaaaagaaatcatggatttattattgatgctttttttgatttatt |
25531024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University