View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1865_high_13 (Length: 219)
Name: NF1865_high_13
Description: NF1865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1865_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 25745063 - 25744860
Alignment:
| Q |
1 |
aatgctcttatgtcttgcagagtccagatgggttaacagtggtttcagccggaggagatgagactcttcgcttttgggatatttttggaccagctgttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25745063 |
aatgctcttatgtcttgcagagtccagatgggttaacagtggtttcagccggaggagatgagactcttcgcttttgggatatttttggaccagctgttaa |
25744964 |
T |
|
| Q |
101 |
tgatacaagagagtcatcggttctgggtaacctattgtcgatgaaggcatcacaaataagatgatagaaacataacaattttgttctattagggttgcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | || |
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| T |
25744963 |
tgatacaagagagtcatcggttctgggtaacctattgtcgatgaaggcgtcacaaataagataatagaaacataacaattttgttctattagggtagtat |
25744864 |
T |
|
| Q |
201 |
tctt |
204 |
Q |
| |
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|||| |
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| T |
25744863 |
tctt |
25744860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 4348992 - 4349185
Alignment:
| Q |
1 |
aatgctcttatgtcttgcagagtccagatgggttaacagtggtttcagccggaggagatgagactcttcgcttttgggatatttttggaccagctgttaa |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||||| ||||||||| | || ||||||||||| ||||||||||||||||||||||||||| ||| || |
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| T |
4348992 |
aatgctcttatgtcttgcagagttcagatggtttaactgtggtttcatctgggggagatgagacgcttcgcttttgggatatttttggaccacctgctac |
4349091 |
T |
|
| Q |
101 |
tgatacaagagagtcatcggttctgggtaacctattgtcgatgaaggcatcacaaataagatgatagaaacataacaattttgttctattagggt |
195 |
Q |
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|||||||| |||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4349092 |
tgatacaatagagtcttcggttct-ggtaatctattgtcgatgaaggcatcacaaataagatgatagaaacataacaattttgttctattagggt |
4349185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 18928268 - 18928209
Alignment:
| Q |
135 |
ttgtcgatgaaggcatcacaaataagatgatagaaacataacaattttgttctattagggt |
195 |
Q |
| |
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|||||||||||| ||| ||||||||||||||| ||||||||| ||||| |||| ||||||| |
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| T |
18928268 |
ttgtcgatgaagacattacaaataagatgataaaaacataactatttt-ttctcttagggt |
18928209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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