View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1865_high_4 (Length: 416)
Name: NF1865_high_4
Description: NF1865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1865_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 8 - 397
Target Start/End: Original strand, 47529057 - 47529446
Alignment:
| Q |
8 |
agattattcttctgatgagtttagtcaaaagaagcgtaagttaaatgtggctcttcatgtattgtatgagagtttttatccaactattgatgctttatct |
107 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47529057 |
agatttttcttctgatgagtttagtcaaaagaagcgtaagttaaatgtggctcttcatgtattgtatgagagtttttatccaactattgatgctttatct |
47529156 |
T |
|
| Q |
108 |
ggaagagagttgattagagacattgtttttagtagagactcggtacataagcgcttgaacttttgtggtttctataatgtgattttggagaaaatggagg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47529157 |
ggaagagagttgattagagacattgtttttagtagagactcggtacataagcgcttgaacttttgtggtttctataatgtgattttggagaaaatggagg |
47529256 |
T |
|
| Q |
208 |
aagtgatttcggtggctaccataaggatttatggtcacaaggttgctgagatagttttcgtggccaccaagaaagaacatcgaggacaaggaatgtgtcg |
307 |
Q |
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| T |
47529257 |
aagtgatttcggtggctactataaggatttatggtcacaaggttgctgagatagttttcttggccaccaagaaagaacatcgaggacaaggaatgtgtcg |
47529356 |
T |
|
| Q |
308 |
tttgttgatggatgaacttgagaaacaattgactcgcttaggactagaaagcatggttttgcattcatccgaggatgctatagacacatg |
397 |
Q |
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| T |
47529357 |
tttgttgatggatgaacttgagaaacaattgactcgcttaggagtagaaagcatggttttgcattcatccgaggatgctatagacacatg |
47529446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 27 - 394
Target Start/End: Original strand, 47523704 - 47524071
Alignment:
| Q |
27 |
tttagtcaaaagaagcgtaagttaaatgtggctcttcatgtattgtatgagagtttttatccaactattgatgctttatctggaagagagttgattagag |
126 |
Q |
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||||||||||||||| ||||| ||| |||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||||| ||||||| || |
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| T |
47523704 |
tttagtcaaaagaagataaagttgaatatggctcttgatgtattgtatgagagttttaacccaactattgatgctttatccggaagagaattgattaaag |
47523803 |
T |
|
| Q |
127 |
acattgtttttagtagagactcggtacataagcgcttgaacttttgtggtttctataatgtgattttggagaaaatggaggaagtgatttcggtggctac |
226 |
Q |
| |
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| ||||||||||||||| ||| |||||| |||||||||||| | ||||||||||||||||||| |||||||||| |||| |||||||| || || |
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| T |
47523804 |
atgttgtttttagtagaggctcacaacataaacgcttgaactttcatagtttctataatgtgattttagagaaaatgggtaaagtcatttcggttgcaac |
47523903 |
T |
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| Q |
227 |
cataaggatttatggtcacaaggttgctgagatagttttcgtggccaccaagaaagaacatcgaggacaaggaatgtgtcgtttgttgatggatgaactt |
326 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||| || || |||||| || || ||||| |||||||||||||||||||||||||| | || ||| |
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| T |
47523904 |
tataaggatttatggtcaaaaggttgcagagatagtttttgtagctaccaaggaacaatatcgaagacaaggaatgtgtcgtttgttgatgcacgagctt |
47524003 |
T |
|
| Q |
327 |
gagaaacaattgactcgcttaggactagaaagcatggttttgcattcatccgaggatgctatagacac |
394 |
Q |
| |
|
||| |||| ||||| ||||||||| | | |||| ||||||||||||| |||||||||||||||||||| |
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| T |
47524004 |
gaggaacagttgacacgcttaggagttggaagcttggttttgcattcctccgaggatgctatagacac |
47524071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 394
Target Start/End: Original strand, 47550888 - 47551120
Alignment:
| Q |
162 |
ttgaacttttgtggtttctataatgtgattttggagaaaatggaggaagtgatttcggtggctaccataaggatttatggtcacaaggttgctgagatag |
261 |
Q |
| |
|
||||||||| |||||||||||| ||||||| | |||||| || |||||| || ||||| ||| |||||||||||||||| |||||||||||||| | |
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| T |
47550888 |
ttgaactttcgtggtttctatactgtgattatagagaaagggggtaaagtgagttatgtggcaaccgtaaggatttatggtcaaaaggttgctgagattg |
47550987 |
T |
|
| Q |
262 |
ttttcgtggccaccaagaaagaacatcgaggacaaggaatgtgtcgtttgttgatggatgaacttgagaaacaattgactcgcttaggactagaaagcat |
361 |
Q |
| |
|
||||| |||||||||| ||| || ||||| |||||||||||||| ||||||||||| | | |||||| ||||||||| | ||||||| | | ||| | |
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|
| T |
47550988 |
ttttcatggccaccaaaaaaaaatatcgaagacaaggaatgtgttgtttgttgatgaaggggcttgaggaacaattgattaacttaggagttgggagctt |
47551087 |
T |
|
| Q |
362 |
ggttttgcattcatccgaggatgctatagacac |
394 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| |
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|
| T |
47551088 |
ggttttgcattcctccaaggatgctatagacac |
47551120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 394
Target Start/End: Complemental strand, 44870733 - 44870355
Alignment:
| Q |
16 |
cttctgatgagtttagtcaaaagaagcgtaagttaaatgtggctcttcatgtattgtatgagagtttttatccaactattgatgctttatctggaagaga |
115 |
Q |
| |
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||||| |||||||||||||| |||||| |||||| |||| |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
44870733 |
cttctaatgagtttagtcaagagaagcataagttgaatgcagctcttggtgtattgtatgagggttttaatccaactattgatgctttatctggaagaga |
44870634 |
T |
|
| Q |
116 |
gttgattagagacattgtttttagtagagactcggtacataagcgcttgaacttttgtggtttctataatgtgattttggagaaaatggaggaagtgatt |
215 |
Q |
| |
|
|||||||| ||| |||||||||||||||| || | |||||| ||||||||||| |||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
44870633 |
gttgattaaagatcttgtttttagtagagattcagaacataaacgcttgaacttccgtggtttctatactgtgattttggagaaaatgggggaagtgatt |
44870534 |
T |
|
| Q |
216 |
tcggtggctaccataaggatttatggtcacaaggttgctgagatagttttcgtggccaccaagaaagaacatcgaggacaaggaatgtgtcgtttgttga |
315 |
Q |
| |
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|||||||| || |||||||||| |||||| |||||||| ||||||||||| ||||| |||||| | |||||||||||| |||||||||||||||||||| |
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| T |
44870533 |
tcggtggcaactataaggatttttggtcaaaaggttgcagagatagtttttgtggctaccaaggagcaacatcgaggacgaggaatgtgtcgtttgttga |
44870434 |
T |
|
| Q |
316 |
tggatgaacttgagaaacaattgactcgcttaggactagaaagcatggttttgcattcatccgaggatgctatagacac |
394 |
Q |
| |
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||||||| |||||| |||| ||||||||||||||| ||| ||| |||||||||||||||| || ||||||||| |||| |
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|
| T |
44870433 |
tggatgagcttgaggaacagttgactcgcttaggagtaggaagattggttttgcattcatctgaagatgctataaacac |
44870355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 24 - 350
Target Start/End: Complemental strand, 9819878 - 9819552
Alignment:
| Q |
24 |
gagtttagtcaaaagaagcgtaagttaaatgtggctcttcatgtattgtatgagagtttttatccaactattgatgctttatctggaagagagttgatta |
123 |
Q |
| |
|
||||||| ||||||| || ||||||| ||| |||||||| ||||||||||||| ||||| |||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
9819878 |
gagtttaatcaaaaggagagtaagttgaatatggctcttggtgtattgtatgagggttttaatccaacttttgatgctttatcaggaagagagttgatta |
9819779 |
T |
|
| Q |
124 |
gagacattgtttttagtagagactcggtacataagcgcttgaacttttgtggtttctataatgtgattttggagaaaatggaggaagtgatttcggtggc |
223 |
Q |
| |
|
||| |||||||||| ||||| || | ||| || ||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |
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| T |
9819778 |
aagatgttgtttttagcagagaatcagaacacaatcgcttaaacttttgtggtttctataatgtaattttggagaaaatgggtgaagtgatttcagtggc |
9819679 |
T |
|
| Q |
224 |
taccataaggatttatggtcacaaggttgctgagatagttttcgtggccaccaagaaagaacatcgaggacaaggaatgtgtcgtttgttgatggatgaa |
323 |
Q |
| |
|
|| |||||||||||||||| |||||||| ||| |||||||||||||||||||| || || ||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
9819678 |
aactgtaaggatttatggtcaaaaggttgcagaggtagttttcgtggccaccaaggaacaatatcgacgacaaggaatgtgtcatttgttgatggatgag |
9819579 |
T |
|
| Q |
324 |
cttgagaaacaattgactcgcttagga |
350 |
Q |
| |
|
|||||||||| || |||||||||||| |
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| T |
9819578 |
attgagaaacagttaactcgcttagga |
9819552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 24 - 350
Target Start/End: Original strand, 9854102 - 9854428
Alignment:
| Q |
24 |
gagtttagtcaaaagaagcgtaagttaaatgtggctcttcatgtattgtatgagagtttttatccaactattgatgctttatctggaagagagttgatta |
123 |
Q |
| |
|
||||||| ||||||| || ||||||| ||| |||||||| ||||||||||||| ||||| |||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
9854102 |
gagtttaatcaaaaggagagtaagttgaatatggctcttggtgtattgtatgagggttttaatccaacttttgatgctttatcaggaagagagttgatta |
9854201 |
T |
|
| Q |
124 |
gagacattgtttttagtagagactcggtacataagcgcttgaacttttgtggtttctataatgtgattttggagaaaatggaggaagtgatttcggtggc |
223 |
Q |
| |
|
||| |||||||||| ||||| || | ||| || ||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |
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|
| T |
9854202 |
aagatgttgtttttagcagagaatcagaacacaatcgcttaaacttttgtggtttctataatgtaattttggagaaaatgggtgaagtgatttcagtggc |
9854301 |
T |
|
| Q |
224 |
taccataaggatttatggtcacaaggttgctgagatagttttcgtggccaccaagaaagaacatcgaggacaaggaatgtgtcgtttgttgatggatgaa |
323 |
Q |
| |
|
|| |||||||||||||||| |||||||| ||| |||||||||||||||||||| || || ||||| |||||||||| |||| ||||||||||||||| |
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|
| T |
9854302 |
aactgtaaggatttatggtcaaaaggttgcagaggtagttttcgtggccaccaaggaacaatatcgacgacaaggaatctgtcatttgttgatggatgag |
9854401 |
T |
|
| Q |
324 |
cttgagaaacaattgactcgcttagga |
350 |
Q |
| |
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|||||||||| || |||||||||||| |
|
|
| T |
9854402 |
attgagaaacagttaactcgcttagga |
9854428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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