View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1865_high_5 (Length: 357)
Name: NF1865_high_5
Description: NF1865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1865_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 25745300 - 25745650
Alignment:
| Q |
1 |
ctgagaaagatggaggactctagaagtatgaggatccaagccaccaactttagtcatagatggatattgccacaaacacagttggttgtgttctggactt |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25745300 |
ctgagaaagatggaggactctagaagtatgagggtccaagcctccaactttagtcatggatggatattgccacaaacacagttggttgtgttctggactt |
25745399 |
T |
|
| Q |
101 |
gtactaaaaccatgaccacttaatatctctttgtaatgtctattccactgtaatccacaaacctgagctttggtatctatgctgcaaatgttagttcctc |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25745400 |
gtactaaagccatgaccacttaatatctctttgtaatgtctattccattgtaatccacaaacctgagctttggtatctatgctgcaaatgttggttcctc |
25745499 |
T |
|
| Q |
201 |
tttgtacattccacaacttaatacatctatcatctgttccgcctccagaagcaagcacatctgaatcataagggcaccaatcaagagctttgactgccgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25745500 |
tttgtacattccacaacttaatacatctatcatctgttccgcctccagaagcaagcacatctgaatcataagggcaccaatcgagagctttgactgccgc |
25745599 |
T |
|
| Q |
301 |
agtatgctctttaaaacaatgcaagaaattcgacgagttcattttcttcga |
351 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
25745600 |
agtatgctctttaaaacaatgcaagaaatttgacgagttcattttattcga |
25745650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 4348745 - 4348615
Alignment:
| Q |
1 |
ctgagaaagatggaggactctagaagtatgaggatccaagccaccaactttagtcatagatggatattgccacaaacacagttggttgtgttctggactt |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4348745 |
ctgagaaagatggaggactctagaagtatggggatccaagccaccaactttagtcatagatggatattgccacaaacacagttggttgtgttctggactt |
4348646 |
T |
|
| Q |
101 |
gtactaaaacc---atgaccacttaatatct |
128 |
Q |
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|||||||| || ||||||||||||||||| |
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| T |
4348645 |
gtactaaagccatgatgaccacttaatatct |
4348615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 18928608 - 18928709
Alignment:
| Q |
64 |
atattgccacaaacacagttggttgtgttctggacttgtactaaaaccatgaccacttaatatctctttgtaatgtctattccactgtaatccacaaacc |
163 |
Q |
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|||||||||||||||||||||||| |||| |||| |||||||||| | |||||||||| |||||||||||| ||||||||||| ||||| ||||||||| |
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| T |
18928608 |
atattgccacaaacacagttggttatgttttggatttgtactaaagctatgaccacttgatatctctttgtggtgtctattccattgtaaaccacaaacc |
18928707 |
T |
|
| Q |
164 |
tg |
165 |
Q |
| |
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|| |
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|
| T |
18928708 |
tg |
18928709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 36840973 - 36841081
Alignment:
| Q |
59 |
gatggatattgccacaaacacagttggttgtgttctggacttgtactaaaaccatgaccacttaatatctctttgtaatgtctattccactgtaatccac |
158 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||| |||||||||| |||||||||||||||||||||| | ||||||||| ||||| |||| |
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| T |
36840973 |
gatggatattgccacaaacacagttggtaatgttttggatttgtactaaagtcatgaccacttaatatctctttatggcatctattccattgtaaaccac |
36841072 |
T |
|
| Q |
159 |
aaacctgag |
167 |
Q |
| |
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||||||||| |
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|
| T |
36841073 |
aaacctgag |
36841081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 18929000 - 18929040
Alignment:
| Q |
240 |
cgcctccagaagcaagcacatctgaatcataagggcaccaa |
280 |
Q |
| |
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|||| ||||||||||||||| ||||| |||||||||||||| |
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| T |
18929000 |
cgcccccagaagcaagcacagctgaaccataagggcaccaa |
18929040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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