View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1865_high_8 (Length: 252)
Name: NF1865_high_8
Description: NF1865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1865_high_8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 42805215 - 42804964
Alignment:
| Q |
1 |
agtagatgtattaaaaatataaatatataatgaatggtaagggcatcaacacaaatccttggcggttgacatacacaacattttcaatgtaaattgcaaa |
100 |
Q |
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| T |
42805215 |
agtagatgtattaaaaatataaatatataatgaatggtaagggcatcaacacaaatccttggtggttgacatacacaacattttcaatgtaaattgcaaa |
42805116 |
T |
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| Q |
101 |
aagctcttaatatcctgtggtccaagaaatactgaaaaattataaacatatgcgttgtgaataaatagtgctattcatgacagggcatcttatgaaggca |
200 |
Q |
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| T |
42805115 |
aagctcttgatatcctgtggtccaagaaatactgaaaaattataaacaaatgcgttgtgaataaatagtgctattcatgacagggcatcttatgaaggca |
42805016 |
T |
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| Q |
201 |
ggataggttcaacccctaaaaacgacataaatgaaattaaaacctcaatcca |
252 |
Q |
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| T |
42805015 |
ggataggttcaacccctaaaaacgacataaatgaaattaaaacctcaatcca |
42804964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 42762794 - 42762562
Alignment:
| Q |
20 |
taaatatataatgaatggtaagggcatcaacacaaatccttggcggttgacatacacaacattttcaatgtaaattgcaaaaagctcttaatatcctgtg |
119 |
Q |
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| T |
42762794 |
taaaaatataataaatggtaagggcatcaacacaaatccttggcagttgacatacacagcattttcattgtaaattgcaaaaagctcttaatatcctgtg |
42762695 |
T |
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| Q |
120 |
gtccaagaaatactgaaaaattataaacatatgcgttgtgaataaatagtgctattcatgacagggcatcttatgaaggcaggataggttcaacccctaa |
219 |
Q |
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| T |
42762694 |
gtccaagaaatactgaaaaattataaacaaatacgttgtgaataaatagtgctattcatgacagggcatcttatgaaggcgggataggttcaacccctaa |
42762595 |
T |
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| Q |
220 |
aaacgacataaatgaaattaaaacctcaatcca |
252 |
Q |
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| T |
42762594 |
aaacgacataaatgaaattaaaacttcaatcca |
42762562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 33048988 - 33048909
Alignment:
| Q |
172 |
tattcatgacagggcatcttatgaaggcaggataggttcaacccctaaaaacgacataaatgaaattaaaacctcaatcc |
251 |
Q |
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| T |
33048988 |
tattcatgacagggcatcttatgaaggcaggataggttcaacccctaaaaacgacataaatgaaattaaaacctcaatcc |
33048909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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