View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1865_high_9 (Length: 252)
Name: NF1865_high_9
Description: NF1865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1865_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 33241489 - 33241714
Alignment:
| Q |
13 |
aatatatcagaagcaaacttaatatttaaaatatgaaatctattgttacgactacaagtatcctccgtactctttcccttgagaaatatttgggttttcc |
112 |
Q |
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| T |
33241489 |
aatatatcagaagcaaacttaatatttaaaatatgagatctattgttacgactacaagtatcctccgtactctttcccttgagaaatatttgggttttcc |
33241588 |
T |
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| Q |
113 |
catgatgcatggatgcctccaaaggagagattttgaa-ttttttgaggaaaacatatgccaacggttagcttcgcggcaacatcacctgttaaacaaagt |
211 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
33241589 |
catgatgcatggaggcctccaaaggagagattttgaatttttttgaggaaaacataagccaacggttagcttcgtggcaacatcacctgttgaacaaagt |
33241688 |
T |
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| Q |
212 |
tggttgaatgactttggttaaatctg |
237 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
33241689 |
tggtcgaatgactttggttaaatctg |
33241714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 33249410 - 33249635
Alignment:
| Q |
13 |
aatatatcagaagcaaacttaatatttaaaatatgaaatctattgttacgactacaagtatcctccgtactctttcccttgagaaatatttgggttttcc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33249410 |
aatatatcagaagcaaacttaatatttaaaatatgagatctattgttacgactacaagtatcctccgtactctttcccttgagaaatatttgggttttcc |
33249509 |
T |
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| Q |
113 |
catgatgcatggatgcctccaaaggagagattttgaa-ttttttgaggaaaacatatgccaacggttagcttcgcggcaacatcacctgttaaacaaagt |
211 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
33249510 |
catgatgcatggaggcctccaaaggagagattttgaatttttttgaggaaaacataagccaacggttagcttcgtggcaacatcacctgttgaacaaagt |
33249609 |
T |
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| Q |
212 |
tggttgaatgactttggttaaatctg |
237 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
33249610 |
tggtcgaatgactttggttaaatctg |
33249635 |
T |
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Back To:
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